ofCUDercouldbereferredtoCUD-orientedautomaticdataprocessing. Keywords:codonusage;codonusagetable;CodonUsageDatabase;CUDerplatform;Bioinformatics 在生物信息学领域,专业数据库和专业软件 用法数据库[1](codonusagedatabase,CUD)(http:// (包括在线服务)是两个不可或缺的基石。密码子 ...
Construction and application of the auto-finding errors platform named CUDer for Codon Usage Database密码子用法数据库(Cud)是密码子用法与密码子优化研究领域的一个重要的在线服务,为了找出该数据库中潜在的两种不再适用的记录,即已过期的陈旧记录和在遗传密码类型上实际无法有效支持的记录(简称不支持记录),本文...
We calculated CAI for all reptile mitogenomes using as reference the codon usage table for Struthio camelus (common ostrich) available in the codon usage database (http://www.kazusa.or.jp/codon/), using the CAIcal program (Puigbò et al., 2008). Sliding window analyses were perform using...
codon usage the frequency with which a particular organism uses the availableCODONSin genes. The majority ofAMINO ACIDSare coded for by more than one codon (seeGENETIC CODEand there are marked preferences for the use of the alternative codons amongst different species. For example, in bacteria CC...
, but can also take into account these additional DNA sequence features. Similarly, the OPTIMIZER website (http://genomes.urv.es/OPTIMIZER/;Puigboet al., 2007) uses information from a database of genes that are predicted to be highly expressed (Puigboet al., 2008) to optimize codon usage...
Step 2: Enter coding sequence(s) into the table. Step 3: Click "Analysis" button to view analysis result. Reference Sources Codon Usage Database - Kazusa *Expression Host Organism Choose Organism... *Copy & Paste your sequence(s) into the spreadsheet ...
The global codon frequency in a human reference genome was downloaded from the Codon Usage Database (http://www.kazusa.or.jp/codon/). Using the RSCU values, a difference in RSCU between the major and the minor codon (∆RSCU) is defined as:...
CodonExplorer:an interactive online database for the analysis of codon usage and sequence composition. Zaneveld, J,Hamady, M,Sueoka, N.,Knight, R. Methods in Molecular Biology . 2009AntjeKnöll, MagdalenaHelmig, OvePeters, WolfgangJilg. (2001) Hepatitis C Virus Transmission in a Pediatric ...
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