密码子使用情况数据库(Codon Usage Database)是CUTG的扩展WWW版本(从GenBank中制成表格的密码子使用情况,Codon Usage Tabulated from GenBank)。 可通过此万维网站点搜索每种生物中密码子的使用频率。 CUTG最初由国立遗传学研究所进化遗传学实验室的池村敏日教授开发。 (目前,池村博士是高级研究大学叶山高级研究中...
Keywords:codonusage;codonusagetable;CodonUsageDatabase;CUDerplatform;Bioinformatics 在生物信息学领域,专业数据库和专业软件 用法数据库[1](codonusagedatabase,CUD)(http:// (包括在线服务)是两个不可或缺的基石。密码子 .kazusa.OT.jp/codon)是一个专门提供密码子用 ...
We used the Sequence Manipulation Suite [27] to count the codons for SARS-CoV-2 viruses (WT and variants), and the Kazusa database (https://www.kazusa.or.jp/codon/) to count the codons of the other viruses. We used PAST to perform multivariate analysis for the codon usage data [28]...
oryzae codon usage database (http:// .kazusa.or.jp/codon/) (Table 1). Recursive PCR (1, 38) was performed using Ex-Taq polymerase (Takara Bio, Otsu, Japan) under the following reaction conditions: 30 cycles of denaturation at 94°C for 60 s, annealing at 60°C for 60 s, and ...
RSCU is calculated by global codon frequency of a specific codon divided by arithmetic mean of global codon frequency of synonym codons. The global codon frequency in a human reference genome was downloaded from the Codon Usage Database (http://www.kazusa.or.jp/codon/). Using the RSCU values...
We calculated CAI for all reptile mitogenomes using as reference the codon usage table for Struthio camelus (common ostrich) available in the codon usage database (http://www.kazusa.or.jp/codon/), using the CAIcal program (Puigbò et al., 2008). Sliding window analyses were perform using...
codon usage patterns. It is noted that although there is codon usage information readily available in the Codon Usage Database (http://www.kazusa.or.jp/codon/) [35], these data may not be useful as prior filtering of highly expressed genes was not performed. Such codon usage data may ...
大肠杆菌、酵母基因组的密码子偏性数据来源于 Codon Usage Database (http://. 万方数据 7期 时 慧等:茶树抗寒调控转录 因子 ICE1 密码子偏性分析 kazusa.or.jp/codon)。密码子使用频率分别采用 EMBOSS 在线程序 (http://vmbioinfo.toulouse.inra. if /emboss) 中的 CHIPS ( Codon heterozygosity in ...
http://.kazusa.or.jp/codon/ 元元 http://codonw.sourceforge.net/ 元元元 http://emboss.toulouse.inra.fr/ 表2 有效密码子数(ENC)和 GC 含量分析 GC3s GC CAI ENC 基因平均值 0.414 0.451 0.110 55.95 361 2013 第十五卷 第三期 绎Vol.15 No.3 ...
Exon sequences for mGluR were downloaded from FlyBase (FB2022_03 Dmel release 6.46144), and codons modified according to the codon usage frequencies in the Drosophila melanogaster genome taken from the Kazusa codon usage database (https://www.kazusa.or.jp/codon/cgi-bin/showcodon.cgi?species=...