README cubfits is an R package providing fits of codon usage bias. For installing cubfits, - see "INSTALL" for detais. About Codon Usage Bias Fits Resources Readme License MPL-2.0 license Citation Cite this repository Activity Stars 5 stars Watchers 3 watching Forks 6 forks ...
Scripts for the codon usage bias analysis of Conserved and Variable regions from core genome proteins. CUBACR scripts are programmed to process multifasta files containing ortholog genes of the desired core-gene set (or corresponding to proteins with a defined expression level), make an amino acid...
bioinformaticsgenomeencgenome-analysisbioinformatics-analysiscaitaicbibioinformatics-toolcodon-usagecodoncodon-biasrscucodonw UpdatedNov 10, 2024 Python NHSDigital/codonPython Star5 Code Issues Pull requests The codon project was created to increase code sharing, code consistency, coding standards, and encourage...
📊 Codon usage tables in code-friendly format + Python bindings bioinformatics synbio codon-optimization codon-usage Updated Sep 6, 2020 Python enovoa / codonUsageToolkit Star 4 Code Issues Pull requests Toolkit to analyze codon usage bias codon-usage codon-bias Updated Mar 10, 2019 R...
Due to differential transfer RNA supply within the cell, synonymous codons are not used with equal frequency, a phenomenon termed codon usage bias (CUB). Previous studies have demonstrated that CUB of endogenous genes trans-regulates the translational efficiency of other genes. We hypothesized similar...
The ENC is generally used to measure the codon usage bias of a gene and is independence of the length of the gene and the number of amino acids (Wright, 1990). The ENC value varies from 20 to 61. For a gene in which only one codon is used for each amino acid in the entire synon...
A tool based onpythonto detect Population's Codon Usage Pattern and Bias within homologous gene of Virus complete genome This lists the basic information for usingCodonM. Requirements A UNIX based operating system. python 2.7 python packages: biopython, scipy, pandas, statsmodels ...
Code Issues Pull requests Discussions A python project for analysis of codon usage for gene or genome analysis bioinformatics genome enc genome-analysis bioinformatics-analysis cai tai cbi bioinformatics-tool codon-usage codon codon-bias rscu codonw Updated Jun 2, 2024 Python R...
A python project for analysis of codon usage for gene or genome analysis github.com/SouradiptoC/CodonU Topics bioinformatics genome enc genome-analysis bioinformatics-analysis cai tai cbi bioinformatics-tool codon-usage codon codon-bias rscu codonw Resources Readme License MIT license Citation...
A codon pair score/codon pair bias calculator Topics bioinformatics codon-usage Resources Readme License View license Activity Stars 4 stars Watchers 2 watching Forks 3 forks Report repository Releases 1 Initial release of codonpair Latest Feb 21, 2020 Packages Contributors 2 smsalad...