Codon usage bias is the preferential or non-random use of synonymous codons, a ubiquitous phenomenon observed in bacteria, plants and animals. Different species have consistent and characteristic codon biases. Codon bias varies not only with species, family or group within kingdom, but also between...
Codon usage biasThe genome of Invertebrate iridescent virus 6 (IIV6) contains a sequence that shows similarity to eubacterial NAD+-dependent DNA ligases. The 615-amino acid open reading frame (ORF 205R) consists of several domains, including an N-terminal domain Ia, followed by an adenylation ...
The results showed that the overall extent of codon usage bias in Morbilliviruses is low (mean ENC = 54.8435). The good correlation between the (C+G) 12% and (G+C) 3% suggested that the mutational pressure rather than natural selection is the main factor that determines the codon usage ...
Analysis of codon usage bias presents significant applications in biotechnological processes, whereas heterologous gene expression is a powerful strategy for producing recombinant products, such as antibiotics insulin and vaccines. Codon bias of host organisms expressing foreign gene will probably be a major...
Codon usage biasOptimal codonsIn this study, trends in synonymous codons usage of Volvariella volvecea have been first examined by analysis of complete coding sequences and gene chip data. The results showed that GC content at three codon positions are obviously different and there were several ...
3.1 Codon usage bias ZIKV isolates can be assigned to three different clusters, the East-African, West-African and Asian cluster, the latter which has recently been introduced into the Americas (Faye et al., 2014). Analysis of the relative synonymous codon usage between ZIKV isolates also group...
However, the quantitative relationship between codon usage bi... Xiu-Feng,Wan,Dong,... - 《Bmc Evolutionary Biology》 被引量: 218发表: 2004年 The hornwort genome and early land plant evolution Angellotti MC, Bhuiyan SB, Chen G, Wan XF. CodonO: codon usage bias analysis within and ...
The study of codon usage bias in species can be in-depth understanding of gene expressions,and provide the basis for molecular breeding. 8 143 eligible coding DNA sequences were selecting from transcriptome data of Carassius auratus which ...
Evolution and cluster analysisMesona chinensis Benth (MCB) is one of the main economic crops in tropical and subtropical areas. To understand the codon usage bias (CUB) in M. chinensis Benth, chloroplast genome is essential to study its genetic law, molecular phylogenetic relationships, and ...
synonymous codon usage biascorrespondence analysisgene nucleotide compositiongene expression levelCDS lengthoptimal codonBy using 1860 cDNA sequences containing complete coding sequence (CDS), a detailed analysis of the effects of several factors on codon usage in rice was performed. The results showed ...