the same input, will resultinthe same rankings databases as output. -r SSH_COMMAND, --ssh SSH_COMMAND If defined, run Cluster-Buster over ssh by running the providedcommandto make the connection before running Cluster-Buster itself. Example:'ssh -oControlMaster=auto -o ControlPath=/tmp/ssh-...
(2015) iRegulon and i-cistarget: reconstructing regulatory networks using motif and track enrichment. Curr. Protoc. Bioinformatics, 52, 1-39.Verfaillie A, Imrichova H, Janky R, Aerts S. iRegulon and i- cistarget: reconstructing regulatory networks using motif and track enrichment. Curr Protoc...
Matys, V. (2006) TRANSFAC(R) and its module TRANSCompel(R): transcriptional gene regulation in eukaryotes,Nucleic Acids Research 34, D108–D110. ArticlePubMedCASGoogle Scholar Bergman, C. M., Carlson, J. W., and Celniker, S. E. Drosophila DNase I footprint database: a systematic genome...
-r, --mirna Exclude miRNA target prediction results from output. Output Structure: Header, lists the input GO ID and the associated GO term. Input GO ID: GO:0004842 GO Term: ubiquitin-protein transferase activity Summary data, the first subsection consists of two lines with the total number ...
cell line of choice and the DHS signal across all systems in the database37. Anchoring our analysis to theFOXA1promoter and using accessible chromatin regions defined in LNCaP prostate cancer cells identified 55 putative CREs to theFOXA1regulatory plexus (r > 0.7) (Fig.2b)....
(p < 1 × 10–5) with MAF ≥ 1%. Next, we catalogued 125 SNPs that were predicted to change the affinity of 303 TF binding motifs (FDR < 0.05) using the Affinity Test for Identifying Regulatory SNPs (atSNP) R software package [56] (Fig.7a, Additional file1: ...
| Fly | Regions | | mc9nr | 11 | dm3 (flybase_r5.37) | dm3-regions-11species.mc9nr | 12 Gb | | Fly | Regions | | mc8nr | 11 | dm6 (flybase_r6.02) | dm6-regions-11species.mc8nr | 10 Gb | | Fly | Regions | | mc9nr | 11 | dm6 (flybase_r6.02) | dm6-regio...
这个时候比R更崩溃是你的小心脏吧!!!别急,有办法了!!! 解决方法 其实这个时候主要是数据不完整导致的。 检查数据完整性 ok就能解决了。 步骤如下: 打开你电脑装的linux系统或者git也可以啊 cd data 进入文件夹 先运行如下命令下载一个文件 用来检查数据完整性。
dollars per tonne for production in June 2008 and shipment in July. It cites Chinese suppliers' higher offer prices for debar. Particular focus is given to freight costs from China to Iranian ports via the Persian Gulf. In related news, debar supplier Esfahan Steel Co. increased its prices ...
Here, we examined the cancer cell membrane‐resident “cis‐bimolecular complex” as a possible cancer target (cis‐bimolecular cancer target: BiCAT) using proximity proteomics, a technique that has attracted attention in the last 10 years. BiCAT were detected using a previously developed method ...