Before running any of the scripts, loadcreate_cistarget_databasesconda environment and set thecreate_cistarget_databases_dirvariable to the dir that contains the cloned repo. #Activate conda environment.conda a
备选方案:直接下载数据库 # Specify database name: feather_database_url='https://resources.aertslab.org/cistarget/databases/homo_sapiens/hg19/refseq_r45/mc8nr/gene_based/hg19-500bp-upstream-7species.mc8nr.feather' feather_database="${feather_database_url##*/}" # Download database directly...
链接在这cisTarget databases (aertslab.org) cisTarget databases List of databases for the cisTarget family of tools (e.g.RcisTarget,SCENIC/pySCENIC, andcisTopic). To choose the database appropiate for your analysis, start by selecting thespeciesandranking type(i.e. What do you want to analy...
wget https://resources.aertslab.org/cistarget/databases/sha256sum.txt # curl -O https://resources.aertslab.org/cistarget/databases/sha256sum.txt # Check if sha256 checksum matches for the downloaded database: awk -v feather_database=${feather_database} '$2 == feather_database' sha256su...
{feather_database_url}"Will not apply HSTS.The HSTS database must be a regularandnon-world-writable file.ERROR:could notopenHSTS store at'/home/lxwang/.wget-hsts'.HSTS will be disabled.--2021-04-1410:20:25--https://resources.aertslab.org/cistarget/databases/homo_sapiens/hg19/refseq_...
先运行如下命令下载一个文件 用来检查数据完整性。 # Download sha256sum.txt (with wget or curl):wget https://resources.aertslab.org/cistarget/databases/sha256sum.txt 得到sha256sum.txt 内容如下: image.png 然后把你下载的文件逐个放进data文件去检查。
cistarget_db.py clusterbuster.py combine_partial_motifs_or_tracks_vs_regions_or_genes_scores_cistarget_dbs.py combine_partial_regions_or_genes_vs_motifs_or_tracks_scores_cistarget_dbs.py convert_cistarget_databases_v1_to_v2.py convert_feather_db_to_sqlite3_db.py ...