Run black on convert_cistarget_databases_v1_to_v2.py. Dec 9, 2022 convert_feather_db_to_sqlite3_db.py Add support for converting sqlite3 (legacy) cisTarget databases to Fe… Dec 8, 2022 convert_motifs_or_tracks_vs_regions_or_genes_scores_to_rankings_cistarget_dbs.py ...
备选方案:直接下载数据库 # Specify database name: feather_database_url='https://resources.aertslab.org/cistarget/databases/homo_sapiens/hg19/refseq_r45/mc8nr/gene_based/hg19-500bp-upstream-7species.mc8nr.feather' feather_database="${feather_database_url##*/}" # Download database directly...
List of databases for the cisTarget family of tools (e.g.RcisTarget,SCENIC/pySCENIC, andcisTopic). To choose the database appropiate for your analysis, start by selecting thespeciesandranking type(i.e. What do you want to analyze: genes or regions?). ...
(with wget or curl): wget https://resources.aertslab.org/cistarget/databases/sha256sum.txt # curl -O https://resources.aertslab.org/cistarget/databases/sha256sum.txt # Check if sha256 checksum matches for the downloaded database: awk -v feather_database=${feather_database} '$2 == ...
先运行如下命令下载一个文件 用来检查数据完整性。 # Download sha256sum.txt (with wget or curl):wget https://resources.aertslab.org/cistarget/databases/sha256sum.txt 得到sha256sum.txt 内容如下: image.png 然后把你下载的文件逐个放进data文件去检查。
{ZSYNC_CURL}" zsync_curl lxwang@DESKTOP-2F2KC96:~/data$ feather_database_url='https://resources.aertslab.org/cistarget/databases/homo_sapiens/hg19/refseq_r45/mc9nr/gene_based/hg19-500bp-upstream-7species.mc9nr.feather' lxwang@DESKTOP-2F2KC96:~/data$ feather_database="${feather_database...
cistarget_db.py clusterbuster.py combine_partial_motifs_or_tracks_vs_regions_or_genes_scores_cistarget_dbs.py combine_partial_regions_or_genes_vs_motifs_or_tracks_scores_cistarget_dbs.py convert_cistarget_databases_v1_to_v2.py convert_feather_db_to_sqlite3_db.py ...