Before running any of the scripts, loadcreate_cistarget_databasesconda environment and set thecreate_cistarget_databases_dirvariable to the dir that contains the cloned repo. #Activate conda environment.conda activate create_cistarget_databases#Set ${create_cistarget_databases_dir} variable to path w...
List of databases for the cisTarget family of tools (e.g. RcisTarget, SCENIC/pySCENIC, and cisTopic). To choose the database appropiate for your analysis, start by selecting the species and ranking type (i.e. What do you want to analyze: genes or regions?). Note that the download si...
备选方案:直接下载数据库 # Specify database name: feather_database_url='https://resources.aertslab.org/cistarget/databases/homo_sapiens/hg19/refseq_r45/mc8nr/gene_based/hg19-500bp-upstream-7species.mc8nr.feather' feather_database="${feather_database_url##*/}" # Download database directly...
wget https://resources.aertslab.org/cistarget/databases/sha256sum.txt # curl -O https://resources.aertslab.org/cistarget/databases/sha256sum.txt # Check if sha256 checksum matches for the downloaded database: awk -v feather_database=${feather_database} '$2 == feather_database' sha256su...
先运行如下命令下载一个文件 用来检查数据完整性。 # Download sha256sum.txt (with wget or curl):wget https://resources.aertslab.org/cistarget/databases/sha256sum.txt 得到sha256sum.txt 内容如下: image.png 然后把你下载的文件逐个放进data文件去检查。
(try:2)https://resources.aertslab.org/cistarget/databases/homo_sapiens/hg19/refseq_r45/mc9nr/gene_based/hg19-500bp-upstream-7species.mc9nr.feather Connectingtoresources.aertslab.org(resources.aertslab.org)|2a02:2c40:0:80::80:1284|:443...connected.HTTP request sent,awaiting response...206...
链接在这cisTarget databases (aertslab.org) cisTarget databases List of databases for the cisTarget family of tools (e.g.RcisTarget,SCENIC/pySCENIC, andcisTopic). To choose the database appropiate for your analysis, start by selecting thespeciesandranking type(i.e. What do you want to analy...
Before running any of the scripts, loadcreate_cistarget_databasesconda environment and set thecreate_cistarget_databases_dirvariable to the dir that contains the cloned repo. #Activate conda environment.conda activate create_cistarget_databases#Set ${create_cistarget_databases_dir} variable to path w...