in <module> import cellranger.preflight as cr_preflight File "/root/cellranger-8.0.1/lib/python/cellranger/preflight.py", line 17, in <module> import cellranger.rna.feature_ref as rna_feature_ref File "/root/cellranger-8.0.1/lib/python/cellranger/rna/feature_ref.py", line 24, in ...
export PERL5LIB=/data/user/sam/project/meta/miniconda2/envs/metawrap-env/lib/5.26.2/ time metawrap read_qc -1 Rawdata/G_MB_1/G_MB_1_1.fastq.gz -2 Rawdata/G_MB_1/G_MB_1_2.fastq.gz -t 60 -o 1.clean_data/G_MB_1 --skip-bmtagger cd /data/user/sam/project/scBCR/1.analy...
Thev2_libandv3_libidentifiers are example identifiers. Every sample from a given batch must have the same batch identifier, but otherwise, the identifier text itself is arbitrary. About chemistry batch correction This Chemistry Batch Correction algorithm is specifically intended to correct for systemati...
│ └── xena ├── miniconda-cr-cs │ └──4.3.21-miniconda-cr-cs-c10 │ ├── bin │ ├── compiler_compat │ ├── conda-bld │ ├── conda-meta │ ├── etc │ ├── include │ ├── lib │ ├── libexec │ ├── LICENSE.txt │ ├── man │ ├── ...
参考源码/path/to/CellRanger-6.1.2/lib/python/cellranger/{matrix.py,feature_ref.py} 在Cellranger比对后的数据中也存有h5格式的数据,我们也可以从这个数据里面获取数据。 上述参考链接有两种方法,这里只讲一种,首先是source一下环境: source /path/to/CellRanger-6.1.2/sourceme.bash ...