cellranger count --id=run_count_col1a2 \ --fastqs=/data/bio-wenzl/Giang \ --sample=col1a2_Ctrl \ --transcriptome=/data/bio-wenzl/zebrafish111 运行目录非常长,只截取最后内容如下: Outputs: - Run summary HTML: /data/b/run_count_col1a2/outs/web_summary.html - Run summary CSV: /dat...
I managed to pinpoint from where the error came from thanks to this thread, so I leave this comment here to make it easier to find for someone that might have the same error I've got. 👍1shaniAmare reacted with thumbs up emoji ...
Cell Rager ATAC 软件是用于分析由 10x Genomics Chromium 平台产生的 scATAC 数据,进行鉴定开放染色质区域、motif 注释、差异可及性分析。包含cellranger-atac mkfastq,cellranger-atac count,cellranger-atac aggr,cellranger-atac reanalyze4个 pipeline。 cellranger-atac mkfastq将 Illumina 测序仪生成的原始碱基(B...
SRR20950111_S1_L001_R2_001.fastq.gz /share/home/sunxiao/SOFTWARES/genomics_tools/cellranger-7.1.0/cellranger count --id=SRR20950111 --transcriptome=/share/home/sunxiao/SOFTWARES/database/refdata-gex-GRCh38-2020-A --fastqs=/share/home/sunxiao/HL/PRJNA701452/step1_SOAPnuke/SRR20950111 --sam...