Run the program as command line tool locally在本地作为命令行工具运行程序 安装本地 CD-HIT 服务器。这可以通过 Docker 完成, https://github.com/weizhongli/cdhit-web-server。 最新版下载地址github.com/weizhongli/c 通过设置适当的相似性阈值,CD-HIT可以帮助有效管理大型数据集,按相似性将序列分组,减少冗...
Summary: CD-HIT is a widely used program for clustering biological sequences to reduce sequence redundancy and improve the performance of other sequence analyses. In response to the rapid increase in the amount of sequencing data produced by the next-generation sequencing ...
去冗余,也可以叫做相似序列的聚类。 CD-HIT stands for Cluster Database at High Identity with Tolerance. The program (cd-hit) takes a fasta format sequence database as input and produces a set of ‘non-redundant’ (nr) representative sequences as output. In addition cd-hit outputs a cluster ...
Python interface to cd-hit clustering program. See example for basic commands. The cd-hit executable files are taken from anaconda. Therefore, this project will work for linux and OSX distributions only. Run following command to get this project git clone https://github.com/sdivye92/cd_hit_...
例句 释义: 全部 更多例句筛选 1. CD-HIT is a widely used program for clustering and comparing large biological sequence datasets. CD-HIT是用来聚类和比较大的生物学序列数据集的一个广泛使用的程序。 chinapubmed.net© 2025 Microsoft 隐私声明和 Cookie 法律声明 广告 帮助 反馈...
-n10,11forthresholds0.95~1.0 -n8,9forthresholds0.90~0.95 -n7forthresholds0.88~0.9 -n6forthresholds0.85~0.88 -n5forthresholds0.80~0.85 -n4forthresholds0.75~0.8 一点一撇很重要,不然会一直报错。 FatalError Tooshort-l,redefineit Programhalted!!
cdhit-common.c++ cdhit-common.h cdhit-est.c++ cdhit-utility.c++ cdhit-utility.h cdhit.c++ license.txt README GPL-2.0 license For cd-hit Module This is the part ofcd-hitmodified bygitee@wym6912/github@wym6912, which is a module of the other program. This module only have these parts in...
Summary: CD-HIT is a widely used program for clustering biological sequences to reduce sequence redundancy and improve the performance of other sequence analyses. In response to the rapid increase in the amount of sequencing data produced by the next-generation sequencing technologies, we have develo...
A novel hierarchical clustering algorithm for gene sequences The program (CD-HIT) takes a fasta format sequence database as input and produces a set of 'non-redundant' (nr) representative sequences as output. ... W Dan,Q Jiang,Y Wei,... - 《Bmc Bioinformatics》 被引量: 56发表: 2012...
:: DESCRIPTION CD-HITis a very widely used program for clustering and comparing protein or nucleotide sequences.CD-HIT is very fast and can handle extremely large databases. CD-HIT helps to significantly reduce the computational and manual efforts in many sequence analysis tasks and aids in under...