[2] Carvalho, R.F., do Canto, L.M., Abildgaard, C. et al. Single-cell and bulk RNA sequencing reveal ligands and receptors associated with worse overall survival in serous ovarian cancer. Cell Commun Signal 20, 176 (2022). https://doi.org/10.1186/s12964-022-00991-4 往期scRNA+bulk ...
英文标题:Development of a CD8+ T cell associated signature for predicting the prognosis and immunological characteristics of gastric cancer by integrating single-cell and bulk RNA-sequencing 期刊:Sci Rep. 2024 Feb 24;14(1):4524. 影响因子:2区4.6 DOI: 10.1038/s41598-024-54273-9. 研究领域:免...
Cost-efficient library generation by early barcoding has been central in propelling single-cell RNA sequencing. Here, we optimize and validate prime-seq, an early barcoding bulk RNA-seq method. We show that it performs equivalently to TruSeq, a standard bulk RNA-seq method, but is fourfold ...
细胞成分主要集中在细胞外区域、转录因子复合物和染色质中(图 2C)。在分子功能类别中,差异 T 细胞标记基因主要与相同的蛋白质结合、信号受体结合和 DNA 结合转录激活因子活性、RNA 聚合酶 II 特异性相关(图 2D)。KEGG分析结果表明这些基因与癌症、人类T细胞白血病病毒1感染、细胞凋亡途径和IL-17信号通路显著相关(...
Bulk RNA-sequencing pipeline流程(含代码) 对于Bulk RNA-seq测序(用于比较转录组学,如不同物种的同种组织样本,也就是我们常说的常规转录组测序,注意和单细胞测序区分),我们常用的分析流程有很多,之前的文章也有介绍。偶然在github上发现一个总结的很完整的分析流程和大家分享。
本期分享一篇整合单细胞和bulk-RNA seq数据分析的文章,揭示了抗原呈递和过程中的肿瘤相关成纤维细胞,并建立了前列腺癌的预测特征模型。文章于2024年1月发表于《Journal of Translational Medicine》,通讯作者为上海交通大学的韩邦旻教授,标题“Integrating single-cell and bulk RNA sequencing data unveils antigen presenta...
文章标题:Key Cell Types and Biomarkers in Heart Failure Identified through Analysis of Single-Cell and Bulk RNA Sequencing Data【整合单细胞和bulk RNA数据确定心力衰竭中的关键细胞类型和生物标志物...
今天小编和大家分享一篇22年11月发表在Frontiers in Immunology(IF:8.786)杂志的文章《Identification and validation of a signature based on macrophage cell marker genes to predict recurrent miscarriage by integrated analysis of single-...
今天小编和大家分享一篇22年11月发表在Frontiers in Immunology(IF:8.786)杂志的文章《Identification and validation of a signature based on macrophage cell marker genes to predict recurrent miscarriage by integrated analysis of single-cell and bulk RNA-sequencing》。作者通过单细胞和bulk RNA测序的联合分析,...
本期分享一篇整合单细胞和bulk-RNA seq数据分析的文章,揭示了抗原呈递和过程中的肿瘤相关成纤维细胞,并建立了前列腺癌的预测特征模型。文章于2024年1月发表于《Journal of Translational Medicine》,通讯作者为上海交通大学的韩邦旻教授,标题“Integrating single-cell and bulk RNA sequencing data unveils antigen presenta...