请自行忽略版本数字差异 vim编辑退出的时候容易出问题,操作失误可能导致整个环境变量变得不可用,到时候一个命令也用不了,全部显示“command ‘xx’ not found” 这时候就只能打gg了 所以推荐另一个方式,echo命令,直接在 .bashrc里面的最后一行加上 cat命令打开查看可以看到最下面有刚刚加进去的路径 重新登录或输入" ...
SRR.bwa.bambowtie2-build $FA $FAbowtie2SRR.bwa.bambowtie2-build $FA $FAbowtie2samtools: command not found my 浏览0提问于2019-03-31得票数 1 1回答 当使用目录作为输出时,Snakemake SyntaxError 、、 我感兴趣的是将所有*-grey.bed文件收集到一个目录中,以便稍后使用。 shell: "chipseq-grey...
Error: Encountered internal Bowtie 2 exception (#1)** Command: /project/jjsmit3_uksr/vbdw222/bowtie2-2.3.5.1-linux-x86_64/bowtie2-align-l --wrapper basic-0 -q -N 1 --score-min L,0,-0.4 --ignore-quals --norc -x /project/jjsmit3_uksr/vbdw222/chromosomal_assembly/Bisulfite_Ge...
When I run the same command but with just a single-end data (I literally just remove the--fastq2 <file>), suddenlyhostile cleanerrors with an error: FileNotFoundError: bowtie2/genome is neither a valid custom index path nor a valid standard index name. Disable offline mode to enable di...
> Exception: Error Setting BAM Metadata: /bin/sh: samtools: command not found > > > > On 26 November 2014 at 16:01, Eric Kuyt <eric.ku...@wur.nl> wrote: > >> Could you try going to Admin -> Manage Installed tool shed repositories ...
I the looked for the fasta file specified in the command: inchworm.K25.L25.DS.fa.min100 both.fa in the chrysalis directory but it was not there. I feel like I might be missing something here? Rob — You are receiving this because you commented. ...
Check Documentation I have checked the following places for your error: nf-core website: troubleshooting nf-core/eager pipeline documentation - nf-core/eager FAQ/troubleshooting can be foundhere Description of the bug When using bowtie2 as the mapper, and not providing a fasta index already, da...
vim编辑退出的时候容易出问题,操作失误可能导致整个环境变量变得不可用,到时候一个命令也用不了,全部显示“command ‘xx’ not found” 这时候就只能打gg了 所以推荐另一个方式,echo命令,直接在 .bashrc里面的最后一行加上 cat命令打开查看可以看到最下面有刚刚加进去的路径 ...
vim编辑退出的时候容易出问题,操作失误可能导致整个环境变量变得不可用,到时候一个命令也用不了,全部显示“command ‘xx’ not found” 这时候就只能打gg了 所以推荐另一个方式,echo命令,直接在 .bashrc里面的最后一行加上 cat命令打开查看可以看到最下面有刚刚加进去的路径 ...