Hi, I have just started learning bowtie2. I encountered a problem with database indexing with bowtie2-build command: indexing runs through but the output doesn't have .rev files, thus preventing me from doing alignments to the particular...
Finally, building the bowtie2-build executable:with OpenMP support -- [g]make bowtie2-build-s USE_SAIS_OPENMP=1 without OpenMP support -- [g]make bowtie2-build-s USE_SAIS=1Building with CMakeTo build Bowtie2 with SRA and libsais support issue the following command:...
bowtie_build_main.cpp) set(INSPECT_CPPS bt2_inspect.cpp ) string(TIMESTAMP BUILD_DATE) execute_process(COMMAND ${CMAKE_CXX_COMPILER} -v OUTPUT_VARIABLE COMPILER_VERSION) add_definitions( -DBOWTIE2 -DBUILD_HOST="${CMAKE_HOST_SYSTEM}" -DBUILD_TIME="${BUILD_DATE}" -DCOMPILER_VERSION=...