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Background This paper describes the results of a Gene Ontology (GO) term enrichment analysis of chicken microarray data using the Bioconductor packages. By checking the enriched GO terms in three contrasts, MM8-PM8, MM8-MA8, and MM8-MM24, of the provided microarray data during this workshop...
Yang. Bioconductor R packages for exploratory analysis and normal- ization of cDNA microarray data. In G. Parmigiani, E.S. Garrett, R.A. Irizarry, and S.L. Zeger, editors, The Analysis of Gene Expression Data: Methods and Software, New York, 2003. Springer Verlag....
data. We describe how to download, process and prepare TCGA data and by harnessing several key Bioconductor packages, we describe how to extract biologically meaningful genomic and epigenomic data. Using Roadmap and ENCODE data, we provide a work plan to identify biologically relevant functional epig...
Unlocking the potential of publicly available microarray data using inSilicoDb and inSilicoMerging R/ Bioconductor packages. BMC Bioinformatics. 2012;13:335.Taminau, J., et al. Unlocking the potential of publicly available microarray data using inSilicoDb and inSilicoMerging R/Bioconductor packages....
Download and install the Bioconductor EG database for a given organismUlrich Wittelsbuerger
plateCore: A Bioconductor package for high throughput analysis of flow cytometry dataErrol StrainFlorian Hahne
For more information aboutderfinderDatacheck the vignettesthrough Bioconductoror at thedocumentation website. Get the latest stableRrelease fromCRAN. Then installderfinderDatafromBioconductorusing the following code: if(!requireNamespace("BiocManager",quietly=TRUE)) { install.packages("BiocManager") }Bioc...
TheRforProteomicspackagedistributes and extends the use-cases described in theUsingRand Bioconductor for proteomics data analysismanuscript (pubmedandpre-print). The package illustrates howRand a selection of dedicated packages that can be used to access mass-spectrometry proteomics data, manipulate and ...
Mapping data on KEGG species code and corresponding Bioconductor gene annotation packagekorg