#data("sc_example_cell_info") # 你也可以尝试该R包自带的数据集。 # 参考 https://bioconductor.org/packages/release/bioc/vignettes/scater/inst/doc/vignette-intro.R sce <- SingleCellExperiment( assays = list(counts = ct), colData = pheno_data ) sce # # 后面所有的分析都是基于 sce 这个变...
“License:” field: should preferably refer to a standard license (seewikipedia) using one of R’s standard specifications. Be specific about any version that applies (e.g., GPL-2). CoreBioconductorpackages are typically licensed under Artistic-2.0. To specify a non-standard license, include a...
这些相互依赖关系可以作为biocPkgList()输出的一部分。BiocPkgTools提供了一些方便的函数来将包依赖关系转换为R图。 Create adata.frameof dependencies usingbuildPkgDependencyDataFrame. Create anigraphobject from the dependency data frame usingbuildPkgDependencyIgraph Use nativeigraphfunctionality to perform arbitrary...
打开RStudio,依次点击:Tools → Packages → CRAN mirror 换镜像的原则是,哪个镜像方便安装哪个包就用哪个镜像 还有第二种修改镜像的方法就是查看R安装在哪儿,修改Rprofile.site. 1 R.home() 根据上述命令指出来的路径修改镜像 查找X:\XXX\R-X.X.X\etc\ 路径下的Rprofile.site文件,用记事本的方式打开,写入...
>https://cran.r-project.org/web/packages/StepReg/index.html), I > successfully uploaded it to CRAN without including 'biocViews:' in the > DESCRIPTION file two months ago. However, I'm encountering difficulties > this time. Any insights or suggestions on resolving this issue would be ...
# 参考 https://bioconductor.org/packages/release/bioc/vignettes/scater/inst/doc/vignette-intro.Rsce<-SingleCellExperiment(assays=list(counts=ct),colData=pheno_data)sce # # 后面所有的分析都是基于 sce 这个变量 ,是一个 SingleCellExperiment 对象,被很多单细胞R包采用。
基本上只需要把下面的代码运行一遍,就明白了:http://www.bioconductor.org/packages/release/bioc/vignettes/STRINGdb/inst/doc/STRINGdb.R library(STRINGdb) ## 整个包不是用roxygen2来写帮助文档的,而且自己把所有函数放在了string_db对象里面,用$符合来调用各个函数,也可以查看函数的帮助文档!
description Tools for building SQLite-based annotation data packages long_description {*}${description} homepage https://bioconductor.org/packages/${R.package} checksums rmd160 4eb9edad24f2fe2ad6d283a916cfed9f23b472a8 \ sha256 ba6f56a58d2ce9f791bdf89b60f92ab92d6a6bc128b3f0cb1297e3253c...
这里有个坑注意一下,这本书的R包要求bioconductor version至少要3.10以上才能用,所以可以一键升级所有R包 代码语言:javascript 复制 ###rm(list=ls())options(stringsAsFactors=F)options(download.file.method='libcurl')options(url.method='libcurl')chooseBioCmirror()###记得选bioc镜像,清华or中科大BiocManager...
S4Vectors is an R/Bioconductor package that provides the foundation of vector-like and list-like containers in Bioconductor. See https://bioconductor.org/packages/S4Vectors for more information including how to install the release version of the package (please refrain from installing directly from ...