land plantmacroevolutionplant diversitywhole genome duplicationRecent studies investigating the evolution of genome size diversity in ferns have shown that they have a distinctive genome profile compared with other land plants. Ferns are typically characterized by possessing medium‐sized genomes, although a...
Methods differ on: (1) what alignment algorithm is used, and the choice of parameters (this affects the aligned region boundaries); (2) what the input is for alignment (typically either fragments of fixed size, or the most complete assembly available). ...
Methods differ on: (1) what alignment algorithm is used, and the choice of parameters (this affects the aligned region boundaries); (2) what the input is for alignment (typically either fragments of fixed size, or the most complete assembly available). ...
$ ./average_nucleotide_identity.py -h usage: average_nucleotide_identity.py [-h] [-o OUTDIRNAME] [-i INDIRNAME] [-v] [-f] [-s FRAGSIZE] [-l LOGFILE] [--skip_nucmer] [--skip_blastn] [--noclobber] [--nocompress] [-g] [--gformat GFORMAT] [--gmethod GMETHOD] [--labels...
We apply our innovation to analyze the primate body mass dataset and plant genome size dataset and test for the autoregressive effect of the rates of continuous evolution along the tree.Dwueng-Chwuan JhwuengMultidisciplinary Digital Publishing InstituteMathematics...
We apply our innovation to analyze the primate body mass dataset and plant genome size dataset and test for the autoregressive effect of the rates of continuous evolution along the tree. Keywords: autoregressive–moving-average model; evolutionary rates; phylogenetic comparative method; Brownian motion;...
Published contigs for cloned genes conditioning heat tolerance, cold tolerance, fertility, and seed size were downloaded as gene reference sequences for SNP calling, along with those SNP calls based on the rice reference genome and published indels. Totally, eight SNP or indel data sets were ...