RNA-seq data from Arabidopsis thaliana to be used to generate synthetic simulationsinitialDataset
Digital gene expression profiling analysis of the early adventitious shoot formation in Arabidopsis thaliana拟南芥不定芽发生早期的数字基因表达谱分析拟南芥离体器官发生不定芽形成转录组数字基因表达谱目前,有关不定芽发生的研究主要集中在单基因的调控方面,缺乏转录组方面的系统研究.利用RNA-seq高通量测序技术在全...
Arabidopsis thaliana serves as a model species for investigating various aspects of plant biology. However, the contribution of genomic structural variations (SVs) and their associate genes to the local adaptation of this widely distribute species remain
In this work, we employed the Illumina high throughput sequencing technology to perform an integrated analysis of the poly-A + enriched and the small RNA fractions of theArabidopsis thalianaroot transcriptome in response to nitrate treatments. Our sequencing strategy identified new nitrate-regulated ...
small RNA LncRNA 环状RNA测序 表观基因组测序 全基因组甲基化测序 简化甲基化测序 MeDIP测序 ChIP-Seq RIP-Seq 微生物基因组测序 16S/18S/ITS等扩增子测序 宏基因组测序 病毒全基因组测序 线粒体基因组测序 全质粒基因组测序 拟南芥(Arabidopsis thaliana)遗传转化...
Here, we performed a detailed transcriptomic analysis in an early time series focused to study rapid-signalling transcriptional outputs induced by well-characterized patterns in the model plant Arabidopsis thaliana. This revealed that the transcriptional responses to diverse patterns (independent of their ...
Abscission is a mechanism by which plants shed entire organs in response to both developmental and environmental signals. Arabidopsis thaliana, in which only the floral organs abscise, has been used extensively to study the genetic, molecular and cellula
bioinformaticsrna-seqdatabasedata-visualizationwebappalternative-splicingbamarabidopsisefprna-seq-mappingarabidopsis-thaliana UpdatedAug 8, 2024 HTML Gregor-Mendel-Institute/SNPmatch Star9 Code Issues Pull requests A simple python library to identify the most likely strain from the population ...
关键词: Arabidopsis thaliana RNA-Seq Differentially expressed genes Floral development gene families DOI: 10.3389/fpls.2014.00802 被引量: 39 年份: 2014 收藏 引用 批量引用 报错 分享 全部来源 免费下载 求助全文 Semantic Scholar 掌桥科研 dx.doi.org NCBI Europe PMC 查看更多 相似文献 参考文献 引证...
RNA-seq data processing Qualified reads were aligned to theA. thalianaTAIR10 reference genome using TopHat v2.0.1340(Supplementary Table2). Gene expression values were computed using Cufflinks v2.2.141. Genes determined to have at least twofold log2expression changes by Cufflinks and passed tests...