Arabidopsis RNA-Seq data setNBPSeq
An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictographic" (eFP) based on its RPKM expression level. bioinformaticsrna-seqdatabasedata-visualizationwebappalternative-splicingbamarabidopsisefprna-seq-mappingarabidopsis-th...
RNA was isolated using TRIZOL reagent (Invitrogen). DNA was removed using DNase TURBO (Ambion) and then cleaned up using RNAeasy Mini Kit (Qiagen). RNA-Seq libraries were prepared using the TruSeq RNA sample preparation kit (Illumina) following the manufacturer’s protocol. All six samples wer...
Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots 来自 EBSCO 喜欢 0 阅读量: 210 作者:EA Vidal,TC Moyano,G Krouk,MS Katari,M Tanurdzic,W Mccombie,GM Coruzzi,RA Gutiérrez
转录调控测序 转录组 链特异性转录组 small RNA LncRNA 环状RNA测序 表观基因组测序 全基因组甲基化测序 简化甲基化测序 MeDIP测序 ChIP-Seq RIP-Seq 微生物基因组测序 16S/18S/ITS等扩增子测序 宏基因组测序 病毒全基因组测序 线粒体基因组测序 全质粒基因组测序基础...
processed RNA-seq and ChIP–seq data. H.G., A.W., N.S. and H.M. contributed to genetic analyses and plasmid construction. X.L. and J.Y. synthesized the strigolactone analogues GR244DO, GR24ent-4DO and GR245DS. J.C. and B.W. measured ABA content. L.W., B.W. and G.X. ...
Improving the annotation of Arabidopsis lyrata using RNA-Seq data. PLoS ONE 10, 1–12 (2015). Article CAS Google Scholar Wang, M., Zhao, Y. & Zhang, B. Efficient test and visualization of multi-set intersections. Sci. Rep. 5, 1–12 (2015). Google Scholar Hämälä, T. & ...
High-throughput single-cellRNA sequencing (scRNAseq) is becoming a cornerstone of developmental research, providing unprecedented power in understanding dynamic processes. Here, we present a high-resolution scRNA-seq expression atlas of the Arabidopsis root composed of thousands of independently profiled ...
目前,有关不定芽发生的研究主要集中在单基因的调控方面,缺乏转录组方面的系统研究.利用RNA-seq高通量测序技术在全基因组范围内检测了不定芽发生早期的基因表达谱,共检测到2 457个差异表达基因.这些基因参与了激素代谢和信号转导,愈伤组织和侧根的形成,茎顶端分生组织的发育和光合作用等过程.进一步的途径富集分析表明...
The flower is essential for sexual reproduction of flowering plants and has been extensively studied. However, it is still not clear how many genes are expressed in the flower. Here, we performed RNA-seq analysis as a highly sensitive approach to investigate the Arabidopsis floral transcriptome at...