For pretraining, we use a non-redundant subset of CATH v4.3.0 domains, which contains 30,948 experimental protein structures with less than 40% sequence identity. We also remove proteins that exceed 2000 AAs in length for efficiency. During pretraining, we randomly truncate long sequences into...
Weitzner et al. describe a computational protocol that uses RosettaAntibody to predict antibody structures from sequence data. SnugDock is then used for docking of these structures to protein antigens. We describe Rosetta-based computational protocols fo
Weitzner et al. describe a computational protocol that uses RosettaAntibody to predict antibody structures from sequence data. SnugDock is then used for docking of these structures to protein antigens. We describe Rosetta-based computational protocols fo