}, "format": { "type": "string", "enum": ["file-path", "directory-path", "path"] "enum": ["file-path", "directory-path", "path", "file-path-pattern"] }, "exists": { "type": "boolean" 0 comments on commit d1914c4 Please sign in to comment. Footer...
A basic workflow for analysing ONT Mpox data to create draft consensus or de-novo assemblies. A workflow for analysing ONT monkeypox virus (MPXV) sequences to create draft consensus or de novo assemblies. @@ -75,6 +75,7 @@ the following command: ``` nextflow pull epi2me-labs/wf-mpx...
Description of feature From slack: It's still common that users want to supply parameters using -c. This often leads to users encountering this issue: nextflow-io/nextflow#2662. From the developer side, one change we can make is that all...
Close #4283 This PR adds a new environment variable NXF_CACHE_DIR which controls the location of the default cache store (default .nextflow in the launch directory). Some users want to be able to l...
.nextflow # Ignore Gradle build output directory build work out 176 changes: 176 additions & 0 deletions 176 COPYING @@ -0,0 +1,176 @@ Apache License Version 2.0, January 2004 http://www.apache.org/licenses/ TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION 1. Definitions. "...
4 changes: 2 additions & 2 deletions 4 nextflow.config Original file line numberDiff line numberDiff line change @@ -1,4 +1,4 @@ manifest.version = '2.3.7' manifest.version = '2.3.8' /* ** bbi-sci process profiles. @@ -295,7 +295,7 @@ profiles { withName: process_hashes...
CLASSPATH=$APP_HOME/gradle/wrapper/gradle-wrapper.jar # Determine the Java command to use to start the JVM. if [ -n "$JAVA_HOME" ] ; then if [ -x "$JAVA_HOME/jre/sh/java" ] ; then # IBM's JDK on AIX uses strange locations for the executables JAVACMD="$JAVA_HOME/jre/sh/ja...
The parameter max-cov would need to be either a file type or an integer value, but not both. We can't specify optional inputs for nextflow processes so both the input channels need to be declared and then if a file is passed as the parameter, we use that channel instead of the value...
PR checklist If you've fixed a bug or added code that should be tested, add tests! If you've added a new tool - add to the software_versions process and a regex toscrape_software_versions.py If you've added a new tool - have you followed the pipeline conventions in the [contribution...
nextflow_config - Config params.custom_config_version is set to master nextflow_config - Config params.custom_config_base is set to https://raw.githubusercontent.com/nf-core/configs/master nextflow_config - Lines for loading custom profiles found nextflow_config - nextflow.config contains configura...