Bug report Expected behavior and actual behavior I have an issue with this exception which outputs "Not a valid path value" when an empty string '' is given as a path. Prior versions of Nextflow didn't cause this. I need empty strings as...
$NXF_VER =~ ([0-9]+)\.([0-9]+)\.([0-9].*) ]]; then echo_red "Not a valid Nextflow version: $NXF_VER" if [[ ! $JAVA_VER =~ $version_check ]]; then if [[ ! $JAVA_VER =~ ^(11|12|13|14|15|16|17|18) ]]; then echo_yellow "NOTE: Nextflow is not tested ...
最近看到生信技能树的一篇推文在介绍nf-core这个流程管理工具，发现官方有qiime2的流程，学习一下，顺便...
"help_text": "Small contigs will typically not add anything to the annotation, but can increase run time or trigger crashes. This value determines the cutoff for contig inclusion." }, "rm_species": { "type": "string", "description": "Taxonomic group to guide repeat masking.", "...
The `% Allocated` tab just rescales the raw value usage with respect to the number of CPUs set with the `cpus` directive (if not set with the directive, the number of CPUs is set to 1, thus showing the same values as in the `Raw Usage` tab). Using the program [stress](https:/...
It is also not immediately obvious how Nextflow statements and expressions are semantically realized as Groovy. To help you decide, this package includes a Java application (AstEchoCli) that will echo the Groovy Abstract Syntax Tree for any Nextflow script or other valid Groovy or Groovy DSL. ...
error.message == "The following invalid input values have been detected:\n\n* --publish_dir_mode: 'incorrect' is not a valid choice (Available choices (5 of 6): symlink, rellink, link, copy, copyNoFollow, ... )\n\n" !stdout } def 'correct validation of integers' () { given:...
[main] DEBUG nextflow.Session - Script base path does not exist or is not a directory: /lustre/scafellpike/local/HT04000/mxm11/shared/dsl2_nextflow_test/workflows/part/bin Nov-15 15:22:46.040 [main] DEBUG nextflow.executor.ExecutorFactory - Extension executors providers=[GoogleLifeSciences...
23.09.1-edge - 11 Sep 2023 Revert "Allow setting shell directive when using the trace file (#4210)" [9f9edcd] 23.09.0-edge - 10 Sep 2023 23.08.1-edge - 17 Aug 2023 23.08.0-edge - 5 Aug 2023 23.07.0-edge - 23 Jul 2023 ...
Valid values are `fully` (default), `semi`, or `none`", "help_text": "Warning: not supported by sage yet.", "default": "fully", "fa_icon": "fas fa-list-ol", "enum": ["fully", "semi", "none"] }, "allowed_missed_cleavages": { "type": "integer", "description": "...