Tutorial on how to use nextflow to create a workflow for BLAST 0 stars 0 forks Branches Tags Activity Star Notifications Nalinikanta7/nextflow_tutorial main 1 Branch0 Tags Code Folders and files Latest commit Nalinikanta7 Initial commitSep 12, 2024 ff4c003· Sep 12, 2024 History1 Commit...
Explore using Groovy in Nextflow: // Can I use subMap on a key not present - yes println ( [ id: 'test' ].subMap( ['id','sample'] ) ) // workflow { // TASK() // } // process TASK { // input: // script: // """ // """ // output: // }About...
If you suspect that a task produces outputs that are non-deterministic, consider using workflow engine features, such as cache opt-out in Nextflow, to avoid caching specific tasks that are non-deterministic. We recommend that you thoroughly review your specific workflow and task requirements before...
This image is not supported by Atlassian, that is why use it wisely and kindly read the Contributions part of the main page for the docker image. I use this image in my notebook for research. If you want to use it not for research, kindly test the image first. The command, which wi...
This repositoryherecontains code to use Nextflow for orchestrating protein design jobs on AWS Batch. In that example, you deploy a sample pipeline for first running RFDesign to design novel protein structures, followed by a fan-out operation to run ESMFold on the generated structures. ...
It is common to use a tractogram to sample from an image containing microstructural information, such as FA. One common method to achieve this is to take the value from the image at each streamline vertex (stepping coordinate), average these into a single value per streamline, and take the...
This repository here contains code to use Nextflow for orchestrating protein design jobs on AWS Batch. In that example, you deploy a sample pipeline for first running RFDesign to design novel protein structures, followed by a fan-out operation to run ESMFold on the generated structures. Conc...
Rather than using an off-the-shelf RNAseq analysis pipeline based on NF-core, Caris crafted a custom solution that married the power of Nextflow with AWS Batch and Amazon EC2. Their infrastructure scaled to use approximately 200,000 concurrent Amazon EC2 Spot vCPUs dist...
Rather than using an off-the-shelf RNAseq analysis pipeline based on NF-core, Caris crafted a custom solution that married the power of Nextflow with AWS Batch and Amazon EC2. Their infrastructure scaled to use approximately 200,000 concurrent Amazon EC2 Spot vCPUs distribu...