Vectorstrip,最初用来识别和移除vector sequence contamination(指一些细菌序列混入了测序结果中),在高通量测序实验中来使用它有点繁琐。Vectorstrip不能发现部分adapter matches(在某些reads上只存在部分adapter),也不支持colour space。FASTX-Toolkit中的fastx_clipper (http://hannonlab.cshl.edu/fastx_ toolkit/)也是命...
Martin M. Cutadapt removes adapter sequences from high-throughput sequencing reads . Bioinformatics in Action . 2012; 17 : 10–12. doi: 10.1186/1687-... M Puchinger,C Zarzer,P Kügler,... - 《Eurasip Journal on Bioinformatics & Systems Biology》 被引量: 3发表: 2012年 Upper and lower ...
Demultiplexing of single or double indexed reads, with or without trimming of adapter sequences. Reconstruction of adapter sequences from paired-end reads, by the pairwise alignment of reads in the absence of a known adapter sequence. Merging of overlapping read-pairs into higher-quality consensus...
Cutadapt removes adapter sequences from sequencing reads - marcelm/cutadapt
For sRNA sequencing data, a simple script can handle the adapter trimming task with acceptable accuracy and speed. However, trimming adapter sequences from genome sequencing data requires tools that are much more efficient, because the volume of data is much larger. Some very fast tools such asB...
You can call the FireEvent action on Global Manager hosted control, if you want to call multiple actions in sequence as a result of this. This action will be run in the context of the current session. No new session will be created. Next Rule Tells the sys...
被引量: 590发表: 2000年 Cutadapt removes adapter sequences from high-throughput sequencing reads Cutadapt removes adapter sequences from high-throughput sequencing reads M Martin - 《Embnet Journal》 被引量: 5698发表: 2011年 加载更多研究点推荐 ion trap 引用走势 2008 被引量:6 站内活动 0关...
Logical remapping can only be done if no existing physical memory is referenced by the device, so Dxgkrnl's call sequence is as follows:* Call DxgkDdiAddDevice for all physical adapters, so that the driver can gather information for all linked physical adapters.* Call DxgkDdiQueryAdapterInfo ...
<xs:complexType name="Foo"> <xs:sequence> <xs:element name="hashmap" type="myHashMapType" </xs:sequence> </xs:complexType> Since: JAXB 2.0 Author: Sekhar Vajjhala, Sun Microsystems Inc. Kohsuke Kawaguchi, Sun Microsystems Inc. See Also: XmlJavaTypeAdapterConstructor...