A map of all protein-protein interactions, an interactome, is thus an invaluable tool. We present an interactome for Arabidopsis (Arabidopsis thaliana) predicted from interacting orthologs in yeast (Saccharomyces cerevisiae), nematode worm (Caenorhabditis elegans), fruitfly (Drosophila melanogaster), and...
Geisler-Lee J, O'Toole N, Ammar R, Provart NJ, Millar AH, Geisler M: A predicted interactome for Arabidopsis. Plant Physiol 2007, 145: 317–329. 10.1104/pp.107.103465 Article PubMed Central CAS PubMed Google Scholar Rhee SY, Beavis W, Berardini TZ, Chen G, Dixon D, Doyle A, Garc...
Geisler-Lee J, O’Toole N, Ammar R, Provart NJ, Millar AH, Geisler M: A predicted interactome for Arabidopsis. Plant Physiol. 2007, 145 (2): 317-329. 10.1104/pp.107.103465. Article PubMed Central CAS PubMed Google Scholar Yanhui C, Xiaoyuan Y, Kun H, Meihua L, Jigang L, Zhao...
in essence it is a network which consists of nodes and edges, which is better visualized as a graph. The Rice Interactions Viewer (RIV; Figure 6), which was developed based on the infrastructure of Arabidopsis Interactions Viewer (AIV), is such a web–based interactome network visualization ...
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Drugging the R-loop interactome: RNA-DNA hybrid binding proteins as targets for cancer therapy. DNA Repair (Amst). 2019;84: 102642. Article PubMed Google Scholar Shaw NN, Arya DP. Recognition of the unique structure of DNA:RNA hybrids. Biochimie. 2008;90(7):1026–39. Article CAS Pub...
Potyviruses are the largest and most abundant family of plant RNA viruses in nature and are responsible for important crop losses26. As the host plant, we used Arabidopsis thaliana (L.) Heynh, the quintessential model in plant biology, with its repertoire of genetic tools, which is naturally ...
a, Percentage of predicted flowering time genes supported by other, related evidence for effects on flowering time. Homolog represents genes that are homologs to Arabidopsis FT genes identified in the FLOR-ID flowering time database (http://www.phytosystems.ulg.ac.be/florid/). SNPs-GWAS refers...
The characterization of protein-protein interactions (PPIs) is fundamental to the understanding of biochemical processes. Many methods have been established to identify and study direct PPIs; however, screening and investigating PPIs involving large or p
3. Promised captures predicted AHA2 interactors To test the applicability of PROMISed to analyze previously published CF-MS experiments, we used the publicly available dataset from Gilbert&Schulze, 2018. The authors first investigated membrane protein–protein complexes isolated from the Arabidopsis thalian...