A map of all protein- protein interactions, an interactome, is thus an invaluable tool. We present an interactome for Arabidopsis (Arabidopsis thaliana) predicted from interacting orthologs in yeast (Saccharomyces cerevisiae), nematode worm (Caenorhabditis elegans), fruitfly (Drosophila melanogaster), ...
A map of all protein- protein interactions, an interactome, is thus an invaluable tool. We present an interactome for Arabidopsis (Arabidopsis thaliana) predicted from interacting orthologs in yeast (Saccharomyces cerevisiae), nematode worm (Caenorhabditis elegans), fruitfly (Drosophila melanogaster), ...
Geisler-Lee J, O’Toole N, Ammar R, Provart NJ, Millar AH, Geisler M: A predicted interactome for Arabidopsis. Plant Physiol. 2007, 145 (2): 317-329. 10.1104/pp.107.103465. Article PubMed Central CAS PubMed Google Scholar Yanhui C, Xiaoyuan Y, Kun H, Meihua L, Jigang L, Zhao...
In addition, the data on subcellular localization and co-expression of interacting proteins were integrated into the deduction of PPIs to strengthen the confidence of the resulting predicted interactome. The predicted interactome in Arabidopsis revealed that many of the most highly conserved proteins were...
The results differ slightly from what we observed in the case of the predicted interactome for Arabidopsis (Geisler-Lee et al., 2007), in part due to the large number of proteins in our interactome that have multiple predicted subcellular localizations while in the Arabidopsis approach single ...
Drugging the R-loop interactome: RNA-DNA hybrid binding proteins as targets for cancer therapy. DNA Repair (Amst). 2019;84: 102642. Article PubMed Google Scholar Shaw NN, Arya DP. Recognition of the unique structure of DNA:RNA hybrids. Biochimie. 2008;90(7):1026–39. Article CAS Pub...
The resulting interactome revealed an extensive network of transkingdom connectivity consisting of thousands of previously undescribed host–microorganism interactions involving 383 strains and 651 host proteins. Specific binding patterns within this network implied underlying biological logic; for example, ...
predictedcis-regulatory elements in the targeted eQTL region. Only items showing distinct peaks near the PZ00001aSV02097079INS were plotted for the epigenetic patterns and TF binding sites. Only the elements located in the positive strand and 4 Kb upstream of the target gene were plotted for the...
(nrefers to the dimension of the symmetric Hi-C matrix, same below in the present section) as input data and has thirteen parameters. Except for the necessary and optional parameters, the only key parameter in Armatus represents the maximum detection resolution. The time complexity of Armatus ...
a, Percentage of predicted flowering time genes supported by other, related evidence for effects on flowering time. Homolog represents genes that are homologs to Arabidopsis FT genes identified in the FLOR-ID flowering time database (http://www.phytosystems.ulg.ac.be/florid/). SNPs-GWAS refers...