Since 1999, The Arabidopsis Information Resource (www.arabidopsis.org) has been curating data about the Arabidopsis thaliana genome. Its primary focus is integrating experimental gene function information from the peer-reviewed literature and codifying it as controlled vocabulary annotations. Our goa...
Using the Arabidopsis information resource (TAIR) to find information about Arabidopsis genes. Curr Protoc Bioinformatics. 2010; Chapter 1 :Unit1.11.Lamesch P, Dreher K, Swarbreck D, Sasidharan R, Reiser L, Huala E. Using the Arabidopsis information resource (TAIR) to find information about ...
The Arabidopsis Information Resource (TAIR, http://arabidopsis.org) is a genome database for Arabidopsis thaliana, an important reference organism for many fundamental aspects of biology as well as basic and applied plant biology research. TAIR serves as a central access point for Arabidopsis data,...
Extrinsic features were derived from external ChIP-Seq or BS-Seq libraries as well as annotations including different types of transposon, types of repeated sequence (direct, dispersed, inverted), and other genetic elements from The Arabidopsis Information Resource (TAIR10)21. We also included ...
Z. et al. The Arabidopsis information resource: making and mining the “gold standard” annotated reference plant genome. Genesis 53, 474–485 (2015). Article CAS PubMed PubMed Central Google Scholar International Brachypodium Initiative. Genome sequencing and analysis of the model grass ...
Functionality allowing stock searching, ordering/payment functions, and stock details is provided by The Arabidopsis Information Resource (TAIR, www.arabidopsis.org). Besides funding from the National Science Foundation (NSF) and other sources, the donation of materials by the international community has...
The Arabidopsis information resource MAX2: More axillary growth 2 GLR: Glutamate receptor GEO: Gene expression omnibus.References Petricka JJ, Winter CM, Benfey PN: Control of Arabidopsis root development. Annu Rev Plant Biol. 2012, 63: 563-590. 10.1146/annurev-arplant-042811-105501. Article...
Anthocyanin, carotenoid, chlorophyll, isoprenoids, lipid, and sugar metabolism-related genes, as well as photosynthesis genes functionally characterized inA. thalianawere retrieved for their corresponding protein sequences from the Arabidopsis Information Resource (TAIR) (https://www.arabidopsis.org/index....
JTT: Jones-Taylor-Thornton MATE: Multidrug and Toxic Compound Extrusion; Multi-Antimicrobial Extrusion MEGA: Molecular Evolutionary Genetic Analysis PF: Pfam domain SA: Salicylic acid TAIR: The Arabidopsis Information Resource TCDB: Transporter Classification Database TMD: Transmembrane domains ...
[48] and the Arabidopsis Information Resource (TAIR) [49] to compile the sequences of over 300 PARP proteins. After preliminary alignment and phylogenetic analysis, we reduced the number of species representing animals; specifically we choose representative species of vertebrates since the genes from...