The 3,000 rice genomes project: new opportunities and challenges for future rice research. Giga- science 2014;3:8. doi:10.1186/2047-217X-3-8.Li JY, Wang J, Zeigler RS (2014) The 3,000 rice genomes project: new opportunities and challenges for future rice research. GigaScience 3:1–3...
The 3,000 rice genomes project. Gigascience 3: 7. Google Scholar PubMed WorldCat Liu Q, Zhou Y, Morrell P L, Gaut B S, 2017 Deleterious variants in Asian rice and the potential cost of domestication. Mol. Biol. Evol. 34: 908– 924. Google Scholar Crossref PubMed World...
Next, we extended the search to 3000 rice accessions with sequenced genomes from 89 countries (3,000 Rice Genomes Project, 2014) and identified 43 accessions carrying the mutation in qTGW3, of which 36 accessions belonged to the tropical japonica subgroup (Supplemental Table 1). These results ...
Here we analyse genetic variation, population structure and diversity among 3,010 diverse Asian cultivated rice (Oryza sativa L.) genomes from the 3,000 Rice Genomes Project. Our results are consistent with the five major groups previously recognized, but also suggest several unreported subpopulations...
. A recent report stated thatWOX1can interact with auxins to regulate the development of leaf veins in cucumber plants [58]. Together with our findings, this suggests thatWOX1has multiple roles in plant growth.WOX4is related to cytokinins and is required for meristem maintenance in rice [59]...
The null variant of the SLC3A1 gene with an established loss of function is a known disease mechanism (PVS1 evidence); this variant has not been detected in the healthy population in the 1000 Genomes Project, ExAC, and gnomAD databases (PM2_supporting evidence). The patient’s phenotype was...
A whole genome alignment between the Col refer- ence genome and the Ler draft genome [32] was carried out to extract sequences of Ler-specific H3K27me3 targets and their surrounding regions (5,000 bp up-/downstream of each gene body) in the two genomes. In 11 out of 23 cases, TEs...
For the past year, LSU Biological and Agricultural Engineering senior Meagan Moore of Baton Rouge has been working to 3D print the first actual-size "human body" for radiation therapy research. The Phantom Project, also known as Marie, will help test radiation exposure on a real-size human to...
The germplasm collection used in this study included a new set of 169 accessions and a previous set of 41 subsp.rapiferagermplasms12from all over the world (Supplementary Fig.1aand Supplementary Table1). We sequenced the genomes of the plants in the new set, resulting in a sequencing dataset...
H3K27me3 plays important roles in secondary metabolite biosynthesis and is considered to be a repressor of secondary metabolism [11]. We thus investigated the role of BP1 IDR2 in the biosynthesis of secondary metabolites. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis revealed tha...