CDKN2B chr14 q23.33 0.05 gain region 0.021 ADAM6, human gene LINC00226 (uc021seu.1) CONCLUSION: In this study, we employed high-throughput approaches to profile the transcriptome and genome of leukemic blasts and an integrative bioinformatics approach to elucidate the molecular pathways associated...
Taylor & Francis Online :: Whole genome transcriptome analysis - RNA Biology - Volume 6, Issue 2 Recent studies indicate that the majority of the genome is transcribed, however only a fraction of this transcription is annotated as what we traditionally... ARR Forrest,P Carninci - 《Rna Biolog...
We performed genome wide methylation and whole transcriptome analyses to elucidate the early pathogenesis of CP in extremely low gestational age neonates (ELGANs). We evaluated peripheral blood cell specimens collected during a randomized trial of erythropoietin for neuroprotection in the ELGAN (PENUT ...
which unambiguously demonstrated the complexity of the transcript variants at whole-genome scale in individual cells. Finally, forDicer1−/−andAgo2−/−(Eif2c2−/−) oocytes, we found that 1,696 and 1,553 genes, respectively, were abnormally upregulated compared to wild-type controls...
Allows profiling of the whole transcriptome across a wide dynamic range Transitioning from Whole-Genome Arrays to Total RNA-Seq Dr. Avrum Spira, a pulmonary and critical care physician at Boston University Medical Center, started a lab with the goal of analyzing samples with whole-genome gene expr...
The genome size of pistachio has been estimated to be about 600 Mb with a high heterozygosity rate [3]. Moazzzam Jazi et al. [2] used a genome-wide transcriptome and discovered the salinity tolerance-related markers and stress response mechanisms by comparing two pistachio cultivars under ...
Genome-wide sRNA and mRNA transcriptomic profiling insights into carbapenem-resistant Acinetobacter baumannii baumannii were subjected to prokaryotic transcriptome sequencing. The change of sRNA and mRNA expression was analyzed by bioinformatics and validated by ... Y Wei,X Xin,J Zhang,... - 《Frontier...
(5,270)moregenesthanmicroarraytechniquesandidentified1,753previouslyunknownsplicejunctionscalledbyatleast5reads.Moreover,8–19%ofthegeneswithmultipleknowntranscriptisoformsexpressedatleasttwoisoformsinthesameblastomereoroocyte,whichunambiguouslydemonstratedthecomplexityofthetranscriptvariantsatwhole-genomescaleinindividual...
We report the first analysis of cell cycle arrest and recovery from silicon starvation in the diatom Thalassiosira pseudonana using whole genome microarrays. Results Three known responses to silicon were examined, 1) silicified cell wall synthesis, 2) recovery from silicon starvation, and 3) co-...
While the genome ofP. digitatumis available, there has been few reports about its resistant mechanism from the transcriptome perspective and there has been no large-scale functional annotation of the genome using expressed genes derived from transcriptomes. Total RNA ofP. digitatumstrain HS-F6 (...