Schistosoma genome database, http://schistodb.net/; Schistosoma mansoni draft genome sequence v.3.1 and S. haematobium expressed sequence tag libraries, ftp://ftp.sanger.ac.uk/pub4/pathogens/Schistosoma/mansoni/; Schistosoma japonicum draft genome, http://www.chgc.sh.cn/japonicum/Resources.html...
Whole-genome sequences from public database used in this study.Sylviane, DerzelleGuillaume, GiraultBranko, KokotovicØystein, Angen
Chadstone, Victoria, Australia) as previously described47. Isolates were sequenced at Australian Genome Research Facility Ltd. (Melbourne, Australia) using the Illumina HiSeq. 2500 platform (Illumina, Inc., San Diego, CA). Multi-locus sequence typing (MLST) assignment ofB. pseudomalleienvironmental s...
The whole-genome resequencing data yielded 17,295,344 SNPs across the 11 wildM. m. domesticussamples (Additional file1: Table S4). Totally, 143,421 SNPs were distributed in exons, 3,997,285 in introns, and 9,949,066 in intergenic regions. The genome resequencing analysis from 9 wildM. ...
The information and quality of Illumina WGS of ZM1 indicated the obtained sequencing data of high quality (Table S1). The sequences were depicted as circles in BlobPlots, with diameters proportional to sequence Discussion The genome characteristics of the strain ZM1 are different from those of ...
We report the complete genome sequence of the Sungri/96 vaccine strain of peste des petits ruminants virus (PPRV). The whole-genome nucleotide sequence has 89 to 99% identity with the available PPRV genome sequences in the NCBI database... M Siddappa,RK Gandham,V Sarsani,... - 《Gen...
The new repetitive elements were classified using PASTEClassifier v1.0 [49] and combined with Repbase database v20.01 [50] to create the final repeat library. Repeat sequences in the pistachio genome were identified and classified using the RepeatMasker program v4.0.6 [51]. The criterion used ...
homozygous individuals in population databases such as The Genome Aggregation Database (gnomAD) may support that the variant is benign. Additionally, search engines like PubMed, OMIM, and Find Zebra are also useful in establishing the significance of a variant or gene. Many commercial software ...
Intergenic length/Genome (%) 96.35 3.2. Gene annotation and comparison To predict protein sequences, 16,128 non-redundant genes were subject to similarity analysis in six public databases. The most genes (12,725 genes / 78.90%) were matched using the Nr database, followed by COG (10,318 ...
(Supplementary Fig.10c). For 22/25 upstream breakpoints, the translocation partner of the breakpoint was within 100 kb of a super enhancer (SE) that is defined in the dbSUPER database38or in melanoma cell lines in the SEdb database39. Seven of the ten tumors with the highestTERT...