Areas covered: In this review, we have used The Cancer Genome Atlas (TCGA) database to explore the relationship between the expression of the major ABC proteins involved in cancer chemoresistance in the most common types of cancer, and the drugs used in the treatment of these tumors that are...
It also found that these noncoding RNA are transcribed by a class of satellite DNA, although they do not produce proteins, their regulatory role is closely related to the growth of tumor [25, 26]. Mutational characteristics in various cancers An analysis based on TCGA data shows that there ...
(ExAC) database that were not contributed via The Cancer Genome Atlas (TCGA; non-TCGA ExAC), assuming lifetime penetrance for MTC of 90%, 50%, and unbounded.#Population-based.#Ten of 61 ATA disease-causing RET mutations were present in the non-TCGA ExAC population with observed frequency ...
Today, this has been solved with the rapid delivery of high-quality image data to neuroradiologists wherever they may be, thanks to the use of high-speed internet access and excellent web-based PACS browsers. Another technique, which is frequently used, is mag- netic resonance imaging (MRI)...
An analysis based on TCGA data shows that there are not only the same repeated loci in MSI-H cases, but also some tumor specific loci. For example, its transmembrane/TGFβ, cell stress response/DNA damage and chromosome/M-phase related molecular functions are abundant in the genes of recurre...
The first step of CAPP-Seq is to identify recurrent mutations in a given cancer type using public cancer databases such as theCOSMIC cancer databaseandTCGA. Next, a library of mutations is created using a complex analytic process. If a tissue biopsy is available, hybrid capture is then perfor...
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upload and analysis of investigator provided data; (4) a list of seminal publications containing specific breast cancer data, e.g., publications from METBRIC, Sanger, TCGA; (5) a list of journals focused on data science that include cancer-related “Big Data”; and (6) miscellaneous ...
Single-cell RNA sequencing (scRNA-seq) is a tool for studying gene expression at the single-cell level that has been widely used due to its unprecedented high resolution. In the present review, we outline the preparation process and sequencing platforms
4.2.3 db: File name ofBLASTdatabase to search thequeryagainst. Unless an absolute path is used, the database will be searched relative to the current working directory first, then relative to the value specified by the BLASTDB environment variable, then relative to the BLASTDB configuration va...