DESeq_DEG=na.omit(DEG) nrDEG=DESeq2_DEG[,c(2,6)] colnames(nrDEG)=c('log2FoldChange','pvalue') save(nrDEG,file= "nrDEG.Rdata") ###Round2-Normalize后的counts exprSet<-floor(counts(dds2,normalize=T)) dds<-DESeqDataSe
abundance methods (DESeq2, LinDA, MaAsLin2, ALDEx2, ANCOM-BC), adjusting for age (categorical), sex (binary) and number of teeth (categorical). (C) Relative abundance of aerobes, anaerobes, and facultative anaerobes in relation to smoking status. Statistical significance was calculated with p...
seq and UHPLC-MS/MS detection. Among the differentially expressed proteins and genes, we emphasizeATF3, ID1, ID3, FOSB, SNAI1, NR4A1, EGR1, LAMC3,andZFP36genes and MT2A, TYMP, COL1A1, COL6A2, and NID2 proteins that were already reported in the endometriosis. Our functional ...
LOG SHADE LOG TECH log-APP LOG-S LOG/CFAR LOG2 LOG4J LOGA LOGAIR LOGAIRNET LOGAIS LOGAM LOGAMP LOGASREQ LOGASSESSREP LOGATAK LOGATAKM LOGB LOGBASE LOGBS LOGC LOGCAB LOGCAP LOGCAT LOGCEN LOGCES LOGCMD LOGCOM LOGCON LOGCOR LOGD ▼...
因为没拿到raw counts,为了有谱,拿airway数据用DESeq2处理两次,看下结果; 可行性以及解释,往下看: 纯代码: Step1、2数据处理和两次差异分析 rm(list=ls())options(stringsAsFactors=F)###matrix和phenodata提取library(airway)data(airway)exprSet<-assay(airway)group_list<-colData(airway)$dex ...
因为没拿到raw counts,拿到的是DESeq2 normlized matrix,为了有谱,拿airway数据用DESeq2处理两次,看下结果,比较一下是不是可行! 可行性以及解释,各位看官,往下看; 纯代码: Step1、2数据处理和两次差异分析 rm(list = ls()) options(stringsAsFactors = F) ...