SGN VIGS Tool:https://vigs.solgenomics.net/ 使用简单,把自己需要沉默的基因cds序列粘贴进去直接RUN即可。SGN VIGS Tool除了可以选取烟草VIGS片段外,该数据库还包含许多物种的基因组。如: 如果你需要的物种或基因组不在列表中,或可以写邮件告知网站的维护人员,说不定就会被添加其中。邮件地址:sgn-feedback@solgen...
the only dependencies for the SGN VIGS tool. BLAST is used together with the BioPerl module Bio::BLAST::Database to get the functional descriptions, and sequences from query genes when using gene IDs as input. To install the tool independently ...
The SGN VIGS Tool: User-Friendly Software to Design Virus-Induced Gene Silencing (VIGS) Constructs for Functional Genomics. Mol Plant. 2015; 8: 486-488. doi: 10.1016/j.molp.2014.11.024 PMID: 25667001The SGN VIGS Tool: User-Friendly Software to Design Virus-Induced Gene Silencing (VIGS)...
Stand Alone version of SGN VIGS Tool Developed on a Catalyst framework To add a VIGS dataset, use the following commands: unzip GCA_003287315.1.zip in emacs, replace the string >lcl| with > , if present (otherwise, fastacmd will not work correctly) Copy the dataset to the correct locatio...
BLAST (Altschul et al., 1990) and Bowtie are the only dependencies for the SGN VIGS tool. BLAST is used together with the BioPerl module Bio::BLAST::Database to get the functional descriptions, and sequences from query genes when using gene IDs as input. To install the tool ...
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target: /home/VIGS container_name: vigs_tool image: breedbase/vigs_tool:v0.01 restart: always 开启docker docker compose up-d#输出[+]Running1/1✔Containervigs_tool Started 添加基因组文件 进入docker,想办法把cds文件扔里面,比如windows打开扔进刚才映射的文件夹$HOME/vigs_sequence_files里 ...
2015. The SGN VIGS tool: user-friendly software to design virus-induced gene silencing (VIGS) constructs for functional genomics. Molecular Plant 8: 486-488.Fernandez-Pozo, N., Rosli, H. G., Martin, G. B. & Mueller, L. A. The SGN VIGS tool: user-friendly software to design virus-...
The SGN VIGS Tool: User-Friendly Software to Design Virus-Induced Gene Silencing (VIGS) Constructs for Functional Genomics. Mol Plant. 2015; 8: 486-488. doi: 10.1016/j.molp.2014.11.024 PMID: 25667001The SGN VIGS Tool: User-Friendly Software to Design Virus-Induced Gene Silencing (VIGS) ...