Lecture 7 Types of databases. Bioinformatics Lecture 7 Types of databases. Principles of organizations and functioning. Sequence formats. Conversion of one sequence format to another. Database search. FASTA, BLAST. Protein and DNA/RNA Databases The first biological database was created by Margaret Da...
There are several primary sequence databases available that are widely used in the field of bioinformatics. The three main primary databases are GenBank at the National Center for Biotechnology Information (NCBI), the DNA Database of Japan (DDBJ), and the European Molecular Biology Laboratory (EMBL...
Nucleotide databases are used to identify the gene or the function of a particular nucleotide sequence by comparing an unknown sequence with the known sequences in the database. Nucleotide databases can be used to study and examine gene expression by using the sequence information stored in the da...
Bioinformatics 27, 2288–2295 (2011). Article CAS PubMed PubMed Central Google Scholar Géron, A., Werner, J., Wattiez, R., Lebaron, P. & Mattallana-Surget, S. Deciphering the functioning of microbial communities: shedding light on the critical steps in metaproteomics. Front. Microbiol....
DATABASESPROTEIN-protein interactionsMotivation The advent of multimodal omics data has provided an unprecedented opportunity to systematically investigate underlying biological mechanisms from distinct yet complementary angles. However, the joint analysis of multi-omics data remains challenging because it requires...
Multiplexed fluorescence in situ hybridization techniques have enabled cell-type identification, linking transcriptional heterogeneity with spatial heterogeneity of cells. However, inaccurate cell segmentation reduces the efficacy of cell-type identifica
Input in the form of keywords: “genistein and cancer”, “genistein and cell pathway”, “genistein nanoformulations” and “genistein clinical trials” was loaded in the search bars of selected databases and studies relevant to the aims and objectives of the current review are included. This ...
Bioinformatics 27, 2288–2295 (2011). Article CAS PubMed PubMed Central Google Scholar Géron, A., Werner, J., Wattiez, R., Lebaron, P. & Mattallana-Surget, S. Deciphering the functioning of microbial communities: shedding light on the critical steps in metaproteomics. Front. Microbiol....
Understanding the molecular and cellular processes involved in lung epithelial regeneration may fuel the development of therapeutic approaches for lung diseases. We combine mouse models allowing diphtheria toxin-mediated damage of specific epithelial cel
DNA methylation patterns store epigenetic information in the vast majority of eukaryotic species. The relatively high costs and technical challenges associated with the detection of DNA methylation however have created a bias in the number of methylation