Lecture 7 Types of databases. Bioinformatics Lecture 7 Types of databases. Principles of organizations and functioning. Sequence formats. Conversion of one sequence format to another. Database search. FASTA, BLAST. Protein and DNA/RNA Databases The first biological database was created by Margaret Da...
There are several primary sequence databases available that are widely used in the field of bioinformatics. The three main primary databases are GenBank at the National Center for Biotechnology Information (NCBI), the DNA Database of Japan (DDBJ), and the European Molecular Biology Laboratory (EMBL...
With the increase in DNA and protein sequencedatabases, there is a growing need for more faster and efficient methods to analyze this large amount of data. One of the most commonly used bioinformatics tools today to study DNA and protein sequences is called BLAST. BLAST stands for Basic Local...
bioinformaticsdatabasesinteractomeprotein interactionprotein networkIn recent years, the biomolecular sciences have been driven forward by overwhelming advances in new biotechnological high-throughput experimental methods and bioinformatic genome-wide computational methods. Such breakthroughs are producing huge amounts...
Multiplexed fluorescence in situ hybridization techniques have enabled cell-type identification, linking transcriptional heterogeneity with spatial heterogeneity of cells. However, inaccurate cell segmentation reduces the efficacy of cell-type identifica
Bioinformatics 27, 2288–2295 (2011). Article CAS PubMed PubMed Central Google Scholar Géron, A., Werner, J., Wattiez, R., Lebaron, P. & Mattallana-Surget, S. Deciphering the functioning of microbial communities: shedding light on the critical steps in metaproteomics. Front. Microbiol....
In the world of computers and artificial intelligence, there are these things called vector databases. These databases are like your magical box of toys, and they store lots of information about different things, but they don’t always know the names or colors. However, they’re super good at...
Synechococcus are unicellular cyanobacteria susceptible to environmental fluctuations and can be used as bioindicators of eutrophication in marine ecosystems. We examined their distribution in two Moroccan lagoons, Marchica on the Mediterranean coast and
Input in the form of keywords: “genistein and cancer”, “genistein and cell pathway”, “genistein nanoformulations” and “genistein clinical trials” was loaded in the search bars of selected databases and studies relevant to the aims and objectives of the current review are included. This ...
tab=ldproxy); STAR v.2.7.10a (https://github.com/alexdobin/STAR); FastQC (https://www.bioinformatics.babraham.ac.uk/projects/fastqc/); Trimmomatic v.0.39 (http://www.usadellab.org/cms/?page=trimmomatic); RSEM v.1.3.3 (https://github.com/deweylab/RSEM); DESeq2 v.1.38.3 (...