Transcriptome-wide identification of RNA binding sites by CLIP-seq. Methods 2013;63: 32-40.Murigneux V, Sauliere J, Roest Crollius H, Le Hir H (2013) Transcriptome-wide identification of RNA binding sites by CLIP-seq. Methods 63: 32-40. doi: 10.1016/j.ymeth.2013.03.022 PMID: ...
3 Additional analysis of data showing transcriptome-wide off-target RNA editing in HEK293T cells with BE3 and two different gRNAs. a, Percentages of different predicted effects and locations of edited cytosines in each RNA-seq replicate from Extended Data Fig. 2c. b, Percentages (x-axis) ...
Here, we present a comparative RNA-seq based approach that allows us to dissect the complex landscape of RNA ends inS. pyogenes. We study the interplay of endoRNase Y with 3′-to-5′ exoRNases inS. pyogenes, a pathogen causing a wide range of diseases in humans. We determine the firs...
This study constitutes the first transcriptome-wide RNA-Seq analysis of separated cell types ofV. carterifocusing on gene expression. The high degree of differential expression indicates a strong differentiation of cell types despite the fact thatV. carteridiverged relatively recently from its unicellular...
Allows profiling of the whole transcriptome across a wide dynamic range Transitioning from Whole-Genome Arrays to Total RNA-Seq Dr. Avrum Spira, a pulmonary and critical care physician at Boston University Medical Center, started a lab with the goal of analyzing samples with whole-genome gene expr...
Transcriptome-wide discovery of circular RNAs in Archaea Circular RNA forms had been described in all domains of life. Such RNAs were shown to have diverse biological functions, including roles in the life cycle ... M Danan,S Schwartz,S Edelheit,... - 《Nucleic Acids Research》 被引量: ...
Fast and cost-efficient workflow—curated for RNA sequencing Flexible—prepare RNA-seq libraries from a wide range of sample types and input quantities Powered by Adaptase™ technology—for adapter tailing and ligation to 1st strand DNA; does not require 2nd strand DNA and leads to stranded RNA...
iTAK: a program for genome-wide prediction and classification of plant transcription factors, transcriptional regulators, and protein kinases. Mol Plant. 2016;9(012):1667–70. Article Google Scholar Love MI, Huber W, Anders S. Moderated estimation of Fold change and dispersion for RNA-seq data...
reported a genome-wide RNA interference screen to identify host factors involved in intracellular bacterial pathogenesis. Using Drosophila cells and the cytosolic pathogen Listeria monocytogenes, authors identified 305 double-stranded RNAs targeting a wide range of cellular functions that altered L. ...
Here, RNA-seq data was employed to provide a genome-wide transcriptional landscape and characterization of the annotated and novel transcripts and alternative splicing events across tissues. Results RNA-seq reads were generated using the Illumina platform from six different tissues (root, stem, leaf,...