A combined transcriptome and metabolome analysis exhibited that differentially expressed genes were enriched in "linoleic acid metabolism", "unsaturated fatty acid biosynthesis", and "amino acid biosynthesis". We mainly identified seven genes involved in starch synthesis (LOC110716805, LOC11072278...
The integrated transcriptome and metabolome analysis was performed to gain a deeper understanding of the color-specific genes. 10 DEMs and 6 DEGs, 36 DEMs and 22 DEGs, and 37 DEMs and 23 DEGs enriched in flavonoid pathway were selected from the comparison groups of 'Baihe' vs. 'Fenhe', '...
Integrated transcriptome and metabolome analysis revealed that flavonoid biosynthesis may dominate the resistance of Zanthoxylum bungeanum against stem canker. J Agric Food Chem. 2021;69(22):6360–78. https://doi.org/10.1021/acs.jafc.1c00357. Article CAS PubMed Google Scholar Zhang L, Li S, ...
Integrated transcriptome and metabolome analysis reveals the physiological and molecular responses of allotetraploid rapeseed to ammonium toxicity Author links open overlay panelShuang Li a b, Lei Yan b, Muhammad Riaz c, Philip J. White b d, Ceng Yi b, Sheliang Wang a b, Lei Shi a b, Fang...
Metabolome and transcriptome association analysis reveals dynamic regulation of purine metabolism and flavonoid synthesis in transdifferentiation during somatic embryogenesis in cotton. Int. J. Mol. Sci. 20, 2070. https://doi.org/10.3390/ijms20092070 (2019). Article CAS PubMed PubMed Central Google Sc...
among the replicates were calculated based on the expression levels (FPKM) of the genes. The assessment of GO term enrichment was conducted using Fisher’s Exact test, followed by adjustment for false discovery rate (FDR) as implemented in PANTHER19.0. For metabolome pathway enrichment analysis, ...
Integrated transcriptome and metabolome analysis revealed that flavonoid biosynthesis may dominate the resistance of Zanthoxylum bungeanum against stem canker. J Agric Food Chem. 2021;69(22):6360–78. https://doi.org/10.1021/acs.jafc.1c00357. Article CAS PubMed Google Scholar Zhang L, Li S, ...
In the present study, two contrasting sesame genotypes differing in salt tolerance were used to decipher the adaptive responses to salt stress based on morphological, transcriptome and metabolome characterizations. Morphological results indicated that under salt stress, the salt-tolerant (ST) genotype has...
In this study, transcriptomic analysis combined with metabolomic analysis was used to detect the changes in RNA level and metabolome levels in the seed germination of HJs. We found that the DEGs were significantly enriched in the flavonoid synthesis and the phenylpropanoid metabolism pathway. DEGs ...
Spatiotemporal transcriptome and metabolome landscapes of cotton fiber during initiation and early development Article Open access 20 January 2025 Transcriptome analysis revealed enrichment pathways and regulation of gene expression associated with somatic embryogenesis in Camellia sinensis Article Open access...