Transcriptomic analysis, coupled with realtime PCR validation, revealed a decrease in the transcript levels of digestive enzymes like 伪-amylase, maltase-glucoamylase, and trehalase after the juveniles changed to black. Furthermore, the mRNA expressions of major yolk proteins showed a decline, ...
Integrated transcriptome and metabolome analysis revealed that flavonoid biosynthesis may dominate the resistance of Zanthoxylum bungeanum against stem canker. J Agric Food Chem. 2021;69(22):6360–78. https://doi.org/10.1021/acs.jafc.1c00357. Article CAS PubMed Google Scholar Zhang L, Li S, ...
Association analysis of the metabolome and transcriptome To demonstrate the synthetic and regulatory characteristics of the DAMs and DEGs, subnetworks were constructed to show transcript–metabolite correlations. Only pairs with a correlation coefficient > 0.8 were considered in the analysis. Four tra...
Breaking the dormancy of seeds and shortening the breeding cycle, which can help to meet the demand for seedling supply of HJ. In this study, transcriptomic analysis combined with metabolomic analysis was used to detect the changes in RNA level and metabolome levels in the seed germination of HJ...
terpene synthetic genes produced increased amounts of terpenoids compared with wild-type control. The combined data analyses from the transcriptome and metabolome provide new insights into our understanding of the complex metabolic genes in terpenoid-rich sage, and our study paves the way for the ...
The integrated transcriptome and metabolome analysis was performed to gain a deeper understanding of the color-specific genes. 10 DEMs and 6 DEGs, 36 DEMs and 22 DEGs, and 37 DEMs and 23 DEGs enriched in flavonoid pathway were selected from the comparison groups of 'Baihe' vs. 'Fenhe', '...
We made transcriptome and metabolome analysis on the developing grains of two barley genotypes differing in the responses to drought stress. Post-anthesis drought treatments led to decreased grain weight and β-glucan content, increased grain protein content and β-amylase activity. Drought stress ...
Genes or metabolites involved in the same biological process will have same or similar change rules, so association analysis of transcriptome and metabolome is an effective way to find key metabolic pathways, key genes and explain the molecular mechanisms. Anthocyanin-rich forage is rare but a power...
Metabolome and transcriptome association analysis reveals dynamic regulation of purine metabolism and flavonoid synthesis in transdifferentiation during somatic embryogenesis in cotton. Int. J. Mol. Sci. 20, 2070. https://doi.org/10.3390/ijms20092070 (2019). Article CAS PubMed PubMed Central Google Sc...
among the replicates were calculated based on the expression levels (FPKM) of the genes. The assessment of GO term enrichment was conducted using Fisher’s Exact test, followed by adjustment for false discovery rate (FDR) as implemented in PANTHER19.0. For metabolome pathway enrichment analysis, ...