We employed TC-iReMet2 with metabolomics and transcriptomics data from the Arabidopsis Columbia 0 wild type and the reil1-1 reil2-1 double mutant before and after cold shift. We identified reactions and pathways that are highly altered in a mutant relative to the wild type. These pathways ...
Gene expression analysis Gene expression profiling RNA sequencing Transcriptomics VirologyThis article is cited by Identification of herpesvirus transcripts from genomic regions around the replication origins Gábor Torma Dóra Tombácz Zsolt Boldogkői Scientific Reports (2023) Integrative profiling of Epst...
This study aimed to define the time course of Lewis lung carcinoma (LLC)-induced CC in females using transcriptomics, while directly comparing biological sex differences.#We found the global gene expression of the gastrocnemius muscle of female mice revealed biphasic transcriptomic alterations, with ...
RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet. 2009;10(1):57–63. Article PubMed Central CAS PubMed Google Scholar Filichkin SA, Priest HD, Givan SA, Shen R, Bryant DW, Fox SE, et al. Genome-wide mapping of alternative splicing in Arabidopsis thaliana. Genome Res...
Compara- tive analysis of sequencing technologies for single-cell transcriptomics. Genome Biol. 2019;20(1):70. 59. Islam S, Zeisel A, Joost S, La Manno G, Zajac P, Kasper M, et al. Quantita- tive single-cell RNA-seq with unique molecular identifiers. Nat Methods. 2014;11(2):163...
In this study, microarray-based transcriptomics and direct injection mass spectrometry based metabolomics were employed to investigate the molecular responses of human lung cancer cells (A549) and human hepatoma cells (HepG2/C3A) exposed ... Zhang,Jinkang 被引量: 16发表: 2015年 Omics-based respon...
Circadian clocks allow organisms to anticipate daily fluctuations in their environment by driving rhythms in physiology and behavior. Inter-organismal differences in daily rhythms, called chronotypes, exist and can shift with age. In ants, age, caste-rel
Immune responses need to be initiated rapidly, and maintained as needed, to prevent establishment and growth of infections. At the same time, resources need to be balanced with other physiological processes. On the level of transcription, studies have shown that this balancing act is reflected in...
Circadian clocks allow organisms to anticipate daily fluctuations in their environment by driving rhythms in physiology and behavior. Inter-organismal differences in daily rhythms, called chronotypes, exist and can shift with age. In ants, age, caste-rel
There are two caveats in the currently available methods: (i) they are typically designed for group comparisons or regression analyses, which do not utilize temporal information efficiently in time-series of transcriptomics measurements; and (ii) genes overlapping in multiple molecular pathway...