Shumway,M. (2010) The Sequence Read Archive (SRA)-a worldwide resource. Nucleic Acids Res., this issue.Leinonen,R., Sugawara,H. and Shumway,M., on behalf of the International Nucleotide Sequence Database Collaboration (2011) The Sequence Read Archive. Nucleic Acids Res., doi:10.1093/nar...
RNA-seq data generated in this study are deposited in the Sequence Read Archive database under the accession numberPRJNA713612. FUSCC TNBC sequence data were available in the NCBI Gene Expression Omnibus (OncoScan array;GSE118527) and Sequence Read Archive (whole-exome sequencing and RNA-seq;SRP...
files. Sequence data were next subjected to a strategic procedure for variant calling using the UnifiedGenotypeCaller in Genome Analysis Tool Kit (GATK). Raw variants were then recalibrated using the Variant Quality Score Recalibration (VQSR). During base and variant recalibration, a list of known ...
Sequence data associated with this project have been deposited in the NCBI Short Read Archive database (BioProject ID: PRJNA943223). Sequence quality control and genome assembly The raw reads from metagenome sequencing were used to generate clean reads by removing adaptor sequences, trimming and ...
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For example, backing up 100 GB of data requires a minimum of 5 GB of free space in the scratch location. Vault storage There’s no limit to the amount of data you can back up to an Azure Backup vault, but the size of a data source (for example a virtual machine or database) ...
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For the Fudan cohort, sequencing data was downloaded from the NIH National Center for Biotechnology Information Sequence Read Archive (SRA) with BioProject ID PRJNA763023. In total, there were 200 metagenomes consisting of four individual groups (50 samples in each group): old control (oControl)...
The sequence read archive. Nucleic Acids Res. 39, D19–D21 (2011). Article CAS PubMed Google Scholar Su, Z. et al. A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium. Nat. Biotechnol. 32, 903–914 (2014). ...
Data Availability The S. mediterranea genome assembly is accessible at GenBank under accession number NNSW00000000 and can also be browsed at and downloaded from http://planmine.mpi-cbg.de. All DNA and RNA reads were deposited at the Sequence Read Archive under the bioproject accession PRJNA3792...