The latest version (6.6) of Pfam contains 3071 families, which match 69% of proteins in SWISS-PROT 39 and TrEMBL 14. Structural data, where available, have been utilised to enure that Pfam families correspond w
Pfam: The protein families database in 2021. Nucleic Acids Res. 49, D412–D419 (2021). Google Scholar Scott, M. & Thomas, L. M. BLAST: at the core of a powerful and diverse set of sequence analysis tools. Nucleic Acids Res. 32, W20–W25 (2004). Google Scholar Jurka, J.,...
A comparison of Pfam domains16between the predicted proteomes ofP. knowlesi,P. vivaxandP. falciparum(Supplementary Table 9,Supplementary Information) revealed major differences in domains that distinguish species-specific protein families involved in antigenic variation. The remainder of the proteome was ...
内容提示: The Pfam protein families databaseAlex Bateman*, Lachlan Coin, Richard Durbin, Robert D. Finn, Volker Hollich 1 ,Sam Griff i ths-Jones, Ajay Khanna 2 , Mhairi Marshall, Simon Moxon,Erik L. L. Sonnhammer 1 , David J. Studholme, Corin Yeats and Sean R. Eddy 2Wellcome Trust...
the pfam protein families database(蛋白质家庭包含了数据库) D o w n l o a d e d f r o m h t t p : / 下载文档 收藏 分享赏 0 内容提供方:hhuiws1482 审核时间:2017-07-25 审核编号:8053035141001027 认证类型:实名认证 能力类型:内容提供者 ...
Abstract The Pfam database is a widely used resource for classifying protein sequences into families and domains. Since Pfam was last described in this journal, over 350 new families have been added in Pfam 33.1 and numerous improvements have been mad
We obtained 223 protein families of allergen proteins compared with 19,632 different families in the Pfam database. Download: Download full-size image Fig 1. Main functions of SDAP and internal data storage of allergens: Left and middle columns contain the list of integrated search tools, ...
Pfam is a large collection of protein families and domains. Over the past 2 years the number of families in Pfam has doubled and now stands at 6190 (version 10.0). Methodology improvements for searching the Pfam collection locally as well as via the web are described. Other recent innovations...
The Pfam protein families database: towards a more sustainable future Nucleic Acids Res., 44 (2016), pp. D279-D285, 10.1093/nar/gkv1344 View in ScopusGoogle Scholar 115 M.N. Price, P.S. Dehal, A.P. Arkin FastTree: computing large minimum evolution trees with profiles instead of a ...
et al. The Pfam protein families database. Nucleic Acids Res. 28, 263–266 (2000). Article CAS PubMed PubMed Central Google Scholar Birney, E. & Durbin, R. Using GeneWise in the Drosophila annotation experiment. Genome Res. 10, 547–548 (2000). Article CAS PubMed PubMed Central ...