"Pfam: A Comprehensive Database of Protein Domain Families Based on Seed Alignments." Proteins 28 (1997):405-420.Sonnhammer, E.L.L., Eddy, S.R. and Durbin, R.: Pfam: A Comprehensive Database of Pro- tein Domain Families Based on Seed Align- ments, Proteins, Vol.28, No.3, pp....
(1997). Pfam: a comprehensive database of protein domain families based on seed alignments. Proteins 28, 405-420.Siibak T, Peil L, Donhofer A, ... Triinu,Siibak,Lauri,... - 《Molecular Microbiology》 被引量: 36发表: 2011年 PROTEINS: Structure, Function, and Genetics 28:405–420 (19...
One of the main challenges when constructing such a database is to simultaneously satisfy the conflicting demands of completeness on the one hand and quality of alignment and domain definitions on the other. The latter properties are best dealt with by manual approaches, whereas completeness in ...
PROTEINS: Structure, Function, and Genetics 28:405–420 (1997) Pfam: A Comprehensive Database of Protein Domain Families Based on Seed Alignments Sonnhammer EL,Eddy SR,Durbin R.Pfam: a comprehensive database of protein domain families based on seed alignments.Proteins. 1997Sonnhammer,E.L. et ...
For each entry, where applicable, the following is provided: UniProt species names, ATCC strain ID (ATCC_Strain), ATCC database name (ATCC_Name), internal reference ID (ID), total number of missing predictor Pfam IDs (missing Pfams) and taxonomy (phylum) as well as the literature source ...
Pfam: A comprehensive database of protein domain families based on seed alignments. Proteins 1997;28:405-420.E. L. Sonnhammer, S. R. Eddy, and R. Durbin. Pfam: a comprehensive database of protein domain families based on seed alignments. Proteins: Structure, Function, and Bioinformatics, ...
Pfam, a protein families database, is one such database. In this chapter, the use of the web interface to Pfam and the resources provided (annotation, sequence alignments, phylogenetic trees, profile hidden Markov models [HMMs]) are described. The exploitation of tools for searching sequences ...
Absolute contact order (ACO), chain length and packing fraction of insert-discontinuous domain pairs from the Pfam-A database.V. V. Hemanth Giri RaoShachi Gosavi
We also describe how mappings provided through the PPDMs resource are made accessible through the main schema of the ChEMBL database.The PPDMs resource and curation interface is available at https://www.ebi.ac.uk/chembl/research/ppdms/pfam_maps. The source-code for PPDMs is available under...
The 347 text files show the results from scanning each of the fasta-files against the Pfam-A databaseLars SnipenDavid W Ussery