(2005). PFAM Database. In: Encyclopedic Reference of Genomics and Proteomics in Molecular Medicine. Springer, Berlin, Heidelberg . https://doi.org/10.1007/3-540-29623-9_8198 Download citation .RIS .ENW .BIB DOIhttps://doi.org/10.1007/3-540-29623-9_8198 Publisher NameSpringer, Berlin, Heid...
sudorook / pfam-dl Star 0 Code Issues Pull requests Script to download latest Pfam release database files. pfam Updated Apr 14, 2024 Shell Improve this page Add a description, image, and links to the pfam topic page so that developers can more easily learn about it. Curate this ...
Pfam, a protein families database, is one such database. In this chapter, the use of the web interface to Pfam and the resources provided (annotation, sequence alignments, phylogenetic trees, profile hidden Markov models [HMMs]) are described. The exploitation of tools for searching sequences ...
Tree = gethmmtree(PFAMName) searches the PFAM database for the record represented by PFAMName, a protein family name, retrieves information, and returns Tree, an object containing a phylogenetic tree representative of the protein family. Tree = gethmmtree(PFAMAccessionNumber) searches the PFAM ...
Approximately 5% of Pfam families are enzymatic, but only a small fraction of the sequences within these families (<0.5%) have had the residues responsible for catalysis determined. To increase the active site annotations in the Pfam database, we have
Pfam: the protein families database11.501Nucleic Acids Res . 2014 Jan;42(Database issue):D222-30. doi: 10.1093/nar/gkt1223. Epub 2013 Nov 27. Abstract Pfam, available via servers in the UK (http://pfam.sanger.ac.uk/) and the USA (http://pfam.janelia.org/), is a widely used dat...
Abstract The Pfam database is a widely used resource for classifying protein sequences into families and domains. Since Pfam was last described in this journal, over 350 new families have been added in Pfam 33.1 and numerous improvements have been mad
For each entry, where applicable, the following is provided: UniProt species names, ATCC strain ID (ATCC_Strain), ATCC database name (ATCC_Name), internal reference ID (ID), total number of missing predictor Pfam IDs (missing Pfams) and taxonomy (phylum) as well as the literature source ...
Then, after mapping the Pfam database on the models, we compute TM-scores at the Pfam region and we evaluate the local quality of the prediction by averaging the per-residue pLDDT score over the Pfam region (see Materials and Methods for definitions and Fig. 1). Download: Download high-...
pfam-database.png 4.3 软件更新 hmmer软件最近一次更新是在2020年11月6日,更新时间大概1-2年一次,新版更新之后可能会支持二进制的模型文件。 5. 参考文献 [1]https://xfam.wordpress.com/2022/08/04/pfam-website-decommission/ [2]https://blog.csdn.net/Hentai1989/article/details/127351397?ops_request_...