A KEGG pathway enrichment analysis revealed that the identified DEGs and DAMs were associated with plant hormone signal transduction and flavonoid biosynthesis pathways. The results of the transcriptome analysis suggested that the expression of ethylene (ETH) and abscisic acid (ABA) signaling-related ...
The results of GO and KEGG pathway enrichment analysis show that our proposed algorithm is able to extract group of coexpressed genes that are biolog ically signi?cant. selleck chemicals We have performed TFBS enrichment analysis to establish the fact that the promoter regions of the genes having...
Gene function enrichment analysis Metascape (http://www.metascape.org) was used for the pathway enrichment analysis to investigate the distribution of the genes affected by CNVs within the Kyoto Encyclopedia of Genes and Genomes (KEGG) and Gene Ontology (GO) databases. Enrichment was determined to ...
The KEGG enrichment analysis showing that the differentially expressed genes are significantly involved in the predicted pathways.Jianqin, ZhangFuzhu, LiuJunting, CaoXiaolin, Liu
KEGG pathway enrichment analysis showed that protein processing in the ER was the most significantly enriched pathway, suggesting that it plays a central role in garlic under high-temperature stress. Figure 10 Top 20 KEGG pathways in garlic leaves under heat stress. The first and outer circles ...
Pathway enrichment. Result of the pathway enrichment analysis. For each method applied to our data set, we plotted the pathway enrichment index (PEI). This index gives the fraction of KEGG pathways found enriched in at least one submode or cluster (see Methods). GraDe obtained a much higher...
For a better understanding of the gene functions and signaling pathways of the identified candidate genes, online GO and KEGG pathway enrichment analyses were performed using KOBAS 3.0. Candidate genes in key pathways were analyzed using the STRING database (https://string-db.org/) for protein in...
Transcriptome analysis of genes in PFSM and WFSM Full size image To understand their biological functions and gene interactions, 807 of 1994 DEGs were annotated by the KEGG database. KEGG metabolic pathway enrichment analysis using a Q-value < 0.05 showed the DEGs were enriched in many metaboli...
the signaling pathways associated the miRNA signatures, we performed the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis58,59,60in DIANA-mirPath v.3.p < 0.05 and false discovery rate (FDR) were considered to estimate statistical significance in enrichment analysis. ...
The pathway enrichment analysis was based on GOBP and KEGG profiling by Metascape (http://metascape.org/) using P value cut-off 0.01. Single-cell trajectory analysis We used diffusion mapping and Monocle to perform a pseudo-time analysis. Cells were chosen based on Seurat cluster identification...