The KEGG enrichment analysis showing that the differentially expressed genes are significantly involved in the predicted pathways.Jianqin, ZhangFuzhu, LiuJunting, CaoXiaolin, Liu
2C). The KEGG enrichment analysis showed significant enrichment of the pathway terms phagosome, cell adhesion molecules (CAMs), rheumatoid arthritis, and leishmaniasis (Fig. 2D). The most significantly enriched KEGG pathways included pathways involved in cancer, axon guidance, and Cushing syndrome (...
For the KEGG enrichment analysis, pathways with a Q value ≤ 0.05 were regarded as significantly changed in response to salinity stress with or without ABA treatment. The top 20 enriched KEGG pathways are presented in Fig.6. In ZCK vs. ZS, the pathways among the DEGs including plant-pa...
The results of GO and KEGG pathway enrichment analysis show that our proposed algorithm is able to extract group of coexpressed genes that are biolog ically signi?cant. selleck chemicals We have performed TFBS enrichment analysis to establish the fact that the promoter regions of the genes having...
1E). GO analysis showed that primary enrichment pathways were chromosome segregation, nuclear division and organelle fission in BP, spindle, chromosomal region and condensed chromosome in CC, tubulin binding, microtubule binding and single-stranded DNA binding in MF. The result of KEGG analysis ...
3b). GO and KEGG pathway enrichment analyses were performed to clarify their functions (Fig. 3c–d). GO biological process analysis revealed that the target genes were involved in diverse biological processes, cellular components, and biological processes. Specifically, they were mainly associated ...
Gene enrichment analysis The cluster-enriched genes and differently expressed genes were feed into clusterProfiler [91] for GO and KEGG enrichment analysis. All genes in the Gossypium hirsutum genome or all genes expressed in corresponding cell types were used as a background. Fisher’s exact test...
Of 325 GO terms assigned in Toxoplasma, 215 have an appropriate size for enrichment analysis (Additional file 1). For analysis of the datasets in this manuscript, GSEA using KEGG gene lists were more informative, but GO analysis is commonly used for inference of gene pathways in microarray ...
Comparative genomic analysis The protein sequences from snake gourd and 12 other representative plant species were clustered into orthologous groups using OrthoFinder92v2.3.7. The obtained orthologous groups (gene families) were annotated using the PANTHER v15 database93. GO and KEGG enrichment analyse...
KEGG enrichment analysis revealed that the frequently mutated genes were predominantly enriched in neuron function-related signal pathways, such as ‘focal adhesion’, ‘axon guidance’, and ‘glutamatergic synapse’22 (Fig. 2A). GO analysis showed that the frequently mutated genes were enriched in ...