The Functional Annotation of Animal Genomes, Data Standards, Annotation and SharingWe describe the FAANG consortiums aims and how we envision data standards, storage, annotation and sharing developing within the consortium, ensuring members of the consortium and the wider community can take maximum ...
et al. Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes Project. Genome Biol. 16, 57 (2015). Article PubMed PubMed Central CAS Google Scholar Warinner, C. et al. Pathogens and host immunity in the ancient human oral ...
microRNAs (miRNAs) are an abundant class of ∼22 nucleotide (nt) regulatory RNAs that are pervasive in higher eukaryotic genomes. In order to fully understand their prominence in genomes, it is necessary to elucidate the molecular mechanisms that can d
Sequencing and functional annotation of genomes of potential probiotic Bacillus species can decipher the mechanism and interaction of such probiotic bacilli with the host GIT [19]. The genome analysis can reveal potential probiotic strains harboring genes encoding probiotic attributes like acid and bile ...
Gene annotation databases (compendiums maintained by the scientific community that describe the biological functions performed by individual genes) are commonly used to evaluate the functional properties of experimentally derived gene sets. Overlap statistics, such as Fishers Exact test (FET), are often ...
Our data demonstrate that remodelling of gene expression is likely to have been one of the evolutionary forces that drove phenotypic diversification of this common livestock species. 展开 关键词: DOMESTICATION of animals BREEDING SHEEP ANIMAL morphology CIS-regulatory elements (Genetics) GENE expression ...
armigera. According to the functional annotation classification of ALL-Unigene ‘s GO database (Zhao et al. 2019), there are a total of 44 subsets in the three groups. The most abundant cell components are cells, cell parts, organelles and macromolecular complexes; from the perspective of ...
These genome sizes are relatively constant compared to diatom genomes and similar to those of Thalassiosira pseudonana (32.4 Mb)16 and Phaeodactylum tricornutum (27.4 Mb)17, which have rather small genomes among diatoms. Table 1 Assembly and annotation results and statistics. Full size table...
The genomes of worldwide poultry breeds divergently selected for performance and other phenotypic traits may also be affected by, and formed due to, past and current admixture events. Adaptation to diverse environments, including acclimation to harsh climatic conditions, has also left selection footprin...
The genomes of trypanosomatids are distantly related to other eukaryotes, with significant numbers of hypothetical or conserved hypothetical trypanosomatid-specific genes, whose functions cannot be determined using homology-dependent annotation methods. Here, we describe homology-independent methods to infer bi...