<integer> <integer> <integer> TCGA-OR-A5J1 58 1 1355 TCGA-OR-A5J2 44 1 1677 TCGA-OR-A5J3 23 0 NA TCGA-OR-A5J4 23 1 423 TCGA-OR-A5J5 30 1 365 > ## --- 一个实战:提取TCGA数据库的BRCA数据集的TNBC亚型的表达量矩阵 前面我们提到过,如果是下载甲基化信号值矩阵或者表达量矩阵,会耗时...
delim("TCGASubtype.20170308.tsv.gz") head(a) ## sampleID Subtype_mRNA ## 1 TCGA-OR-A5J1-01 steroid-phenotype-high+proliferation ## 2 TCGA-OR-A5J2-01 steroid-phenotype-high+proliferation ## 3 TCGA-OR-A5J3-01 steroid-phenotype-high ## 4 TCGA-OR-A5J4-01 <NA> ## 5 TCGA-OR-A5...
"Low_EMT")summary(input_cp_final2$mock_pseudospace)input_cp_final2$pseudospace_status<-ifelse(input_cp_final2$mock_pseudospace<=50,"Late_Pseudotime","Early_Pseudotime")patientstumorsmock_pseudospacetgfb_pseudospaceEMT_scoresnew_annemt_status1ACC.TCGA.OR.A5J1.01A.11R.A29S.07ACC52.3901942.4...
想要查询TCGA里的乳腺癌每个样本是什么亚型,并选出LumA和LumB亚型的样本。 这个信息在xena网站上有现成的,如下: 1.读取数据 其实不光是BRCA,各种癌症的亚型都在这里 rm(list=ls())a=read.delim("TCGASubtype.20170308.tsv.gz")head(a)## sampleID Subtype_mRNA## 1 TCGA-OR-A5J1-01 steroid-phenotype-h...
A5 Cedars Sinai Uterine Corpus Endometrial Carcinoma NCH A6 Christiana Healthcare Colon adenocarcinoma IGC A7 Christiana Healthcare Breast invasive carcinoma NCH A8 Indivumed Breast invasive carcinoma NCH AA Indivumed Colon adenocarcinoma IGC AB Washington University Acute Myeloid Leukemia NCH AC Internation...
您好,我从TCGA泛癌数据集中下载的CNV数据如下,Sample,Chromosome,Start,End,Num_Probes,Segment_MeanTCGA-OR-A5J1-10A-01D-A29K-01,1,3218610.0,247813706,128989.0,0.0001TCGA-OR-A5J1-10A-01D-A29K-01,2,484222.0,45753961,26796.0,0.0073TCGA-OR-A5J1-10A-01D-A29K-01,2,45759027.0,45759054,2.0,-1.6119...