其实不光是BRCA,各种癌症的亚型都在这里 rm(list=ls())a=read.delim("TCGASubtype.20170308.tsv.gz")head(a)## sampleID Subtype_mRNA## 1 TCGA-OR-A5J1-01 steroid-phenotype-high+proliferation## 2 TCGA-OR-A5J2-01 steroid-phenotype-high+proliferation## 3 TCGA-OR-A5J3-01 steroid-phenotype-high...
"Low_EMT")summary(input_cp_final2$mock_pseudospace)input_cp_final2$pseudospace_status<-ifelse(input_cp_final2$mock_pseudospace<=50,"Late_Pseudotime","Early_Pseudotime")patientstumorsmock_pseudospacetgfb_pseudospaceEMT_scoresnew_annemt_status1ACC.TCGA.OR.A5J1.01A.11R.A29S.07ACC52.3901942.4...
您好,我从TCGA泛癌数据集中下载的CNV数据如下,Sample,Chromosome,Start,End,Num_Probes,Segment_MeanTCGA-OR-A5J1-10A-01D-A29K-01,1,3218610.0,247813706,128989.0,0.0001TCGA-OR-A5J1-10A-01D-A29K-01,2,484222.0,45753961,26796.0,0.0073TCGA-OR-A5J1-10A-01D-A29K-01,2,45759027.0,45759054,2.0,-1.6119...
01 International Genomics Consortium Ovarian serous cystadenocarcinoma IGC 02 MD Anderson Cancer Center Glioblastoma multiforme IGC 04 Gynecologic Oncology Group Ovarian serous cystadenocarcinoma IGC 05 Indivumed Lung adenocarcinoma IGC 06 Henry Ford Hospital Glioblastoma multiforme IGC 07 TGen Cell Line Control...
TCGA-OR-A5J1 58 1 1355 TCGA-OR-A5J2 44 1 1677 TCGA-OR-A5J3 23 0 NA TCGA-OR-A5J4 23 1 423 TCGA-OR-A5J5 30 1 365 > ## --- 一个实战:提取TCGA数据库的BRCA数据集的TNBC亚型的表达量矩阵 前面我们提到过,如果是下载甲基化信号值矩阵或者表达量矩阵...