简单看下new_tumor_event信息: colnames(clinical.BCRtab.all[["clinical_nte_coad"]]) ## [1] "bcr_patient_uuid" ## [2] "bcr_patient_barcode" ## [3] "new_tumor_event_dx_days_to" ## [4] "new_tumor_event_site_surgery" ## [5] "new_tumor_event_radiation_tx" ## [6] "new_tum...
To get the following information please change the clinical.info argument => new_tumor_events: new_tumor_event => drugs: drug => follow_ups: follow_up => radiations: radiation 批量下载miRNA sapply(projects, function(project){ query <- GDCquery(project = project, data.category = "Transcripto...
肿瘤分期数据信息文件 TCGA-ACC_linical_stage_event.csv文件 转移复发新发肿瘤事件文件: TCGA-ACC_clinical_new_tumor_event文件 其它每个癌症也都能下载到这些信息文件,还有更多的临床信息文件我没有在这里列举出来 结果文件中的信息 从下载的TCGA临床用药文件中整理提取出有足够样本的耐药组和敏感组的分组信息 以下...
使用方法做个小记录,可以通过不同的参数快速获取不同的临床数据: clinical<-GDCprepare_clinic(query,clinical.info="patient")To get the following information please change the clinical.info argument=>new_tumor_events:new_tumor_event=>drugs:drug=>follow_ups:follow_up=>radiations:radiation 批量下载miRNA ...
BCR Biotab: 解析XML文件之后的tsv文件 indexed信息和XML原始数据之间的区别主要有两个: XML包含的信息更多,如放疗、药物信息、预后信息、样本信息等,而indexed只是XML的一个子集 indexed数据包含更新后的预后信息,也就是说,如果在前一次随访中患者还活着,而后一次随访发现患者已经死去了,则会更新患者的状态为死亡,而...
TCGA临床数据XML文件集成了病人从初次诊断到随访的详细信息，每个文件夹对应一个病人，XML文件结构类似HTML，聚焦于数据内容。提取的数据包括总生存率分析所用的事件天数（days_to_death）与随访时间（days_to_last_followup），以及无进展生存率分析所用的新肿瘤事件（new_tumor_event_after_initial_...
New tumor event typeType of newly developed neoplasm after initial treatment has finished. New tumor anatomic siteAnatomic site of newly developed neoplasm. Other new tumor anatomic siteAlternative anatomic site of a newly developed neoplasm which has not been listed under "New tumor anatomic site"....
答:不可以,例如,clinical.patient 中某个患者其 has_new_tumor_events_information 列的值为 YES,则表示其在 clinical.new_tumor_event 中是有信息的,否则表示 clinical.new_tumor_event 中并无该患者的数据(也存在意外,小编就看到 has_radiations_information == "NO", 但是却在clinical.radiation中有信息的患...
DFI.time: disease-free interval time in days, new_tumor_event_dx_days_to for events, or for censored cases, either last_contact_days_to or death_days_to, whichever is applicable. 无进展间隔期 PFI: progression-free interval event, 1 for patient having new tumor event whether it was a pr...
Clinical_data.new_tumor_event_after_initial_treatmentclinical_data.new_tumor_event_after_initial_treatment是/否/未知指标,用于识别患者在初始治疗后是否发生了新的肿瘤事件。Yes/No/Unknown indicator to identify whether a patient has had a new tumor event after initial treatment. Clinical_data.number_of...