简单看下new_tumor_event信息: colnames(clinical.BCRtab.all[["clinical_nte_coad"]]) ## [1] "bcr_patient_uuid" ## [2] "bcr_patient_barcode" ## [3] "new_tumor_event_dx_days_to" ## [4] "new_tumor_event_site_surgery" ## [5] "new_tumor_event_radiation_tx" ## [6] "new_tum...
To get the following information please change the clinical.info argument => new_tumor_events: new_tumor_event => drugs: drug => follow_ups: follow_up => radiations: radiation 批量下载miRNA sapply(projects, function(project){ query <- GDCquery(project = project, data.category = "Transcripto...
肿瘤分期数据信息文件 TCGA-ACC_linical_stage_event.csv文件 转移复发新发肿瘤事件文件: TCGA-ACC_clinical_new_tumor_event文件 其它每个癌症也都能下载到这些信息文件,还有更多的临床信息文件我没有在这里列举出来 结果文件中的信息 从下载的TCGA临床用药文件中整理提取出有足够样本的耐药组和敏感组的分组信息 以下...
这个是总生存率分析用到的数据,从病人收入到死亡的事件(days_to_death), 从病人收入到最后的随访时间(days_to_last_followup) 这个是无进展生存率分析用到的数据,是否有新的肿瘤事件(new_tumor_event_after_initial_treatment), 从收入病人到新的肿瘤事件发生的时间days_to_new_tumor_event_after_initial_treatme...
TCGA临床数据XML文件集成了病人从初次诊断到随访的详细信息，每个文件夹对应一个病人，XML文件结构类似HTML，聚焦于数据内容。提取的数据包括总生存率分析所用的事件天数（days_to_death）与随访时间（days_to_last_followup），以及无进展生存率分析所用的新肿瘤事件（new_tumor_event_after_initial_...
#[49]'NEW_TUMOR_EVENT_AFTER_INITIAL_TREATMENT' 'AGE' #[51]'CLIN_M_STAGE' 'CLIN_N_STAGE' #[53]'CLIN_T_STAGE' 'CLINICAL_STAGE' #[55]'DAYS_TO_INITIAL_PATHOLOGIC_DIAGNOSIS' 'DISEASE_CODE' #[57]'EXTRANODAL_INVOLVEMENT' 'ICD_10' ...
## [18] "NEW_TUMOR_EVENT_AFTER_INITIAL_TREATMENT" ## [19] "OS_MONTHS" ## [20] "OS_STATUS" ## [21] "OTHER_PATIENT_ID" ## [22] "PERSON_NEOPLASM_CANCER_STATUS" ## [23] "PFS_MONTHS" ## [24] "PFS_STATUS" ## [25] "PRIOR_DX...
frame(colnames(meta)) meta = meta[,c( 'sample', 'OS', 'OS.time', 'race.demographic', 'age_at_initial_pathologic_diagnosis', 'gender.demographic' , 'tumor_stage.diagnoses' )] dim(meta) rownames(meta) <- meta$sample meta[1:4,1:4] #简化meta的列名 colnames(meta)=c('ID','event...
Clinical_data.new_tumor_event_after_initial_treatmentclinical_data.new_tumor_event_after_initial_treatment是/否/未知指标,用于识别患者在初始治疗后是否发生了新的肿瘤事件。Yes/No/Unknown indicator to identify whether a patient has had a new tumor event after initial treatment. Clinical_data.number_of...
new_tumor_event_after_initial_treatment Yes/No/Unknown indicator to identify whether a patient has had a new tumor event after initial treatment. number_of_lymphnodes_examined The total number of lymph nodes removed and pathologically assessed for disease. number_of_lymphnodes_positive_by_he Numeri...