胃肠道肿瘤(ESCA、COAD、STAD和READ)、HNSC和GBM中观察到核心DR、HR和MMR通路基因的频繁沉默。 DLBCL(淋巴肿瘤弥漫性大B细胞淋巴瘤)和UCEC(MGMT+ALKBH3沉默分别>60%和>40%)中DR通路的频繁沉默。 SKCM(皮肤黑色素瘤)、ACC(肾上腺皮质癌...
>TCGAbiolinks:::getGDCprojects()$project_id[1]"TCGA-READ""TARGET-CCSK""TCGA-MESO""TCGA-CHOL"[5]"NCICCR-DLBCL""TARGET-WT""TCGA-TGCT""TCGA-PRAD"[9]"TCGA-LAML""TCGA-ESCA""TCGA-SARC""TCGA-ACC"[13]"TCGA-PAAD""TCGA-BLCA""TCGA-KICH""FM-AD"[17]"TCGA-LUSC""TCGA-THYM""TCGA-GBM"...
[52] "NCICCR-DLBCL" "TARGET-ALL-P1" 2.data.category 可以使用TCGAbiolinks:::getProjectSummary(project)查看project中有哪些数据类型,如查询"TCGA-ACC",有7种数据类型,case_count为病人数,file_count为对应的文件数。下载表达谱,可以设置data.category="Transcriptome Profiling": > TCGAbiolinks:::getProject...
[41] "TARGET-AML" "TARGET-ALL-P2" "NCICCR-DLBCL" "CTSP-DLBCL1" [45] "TARGET-RT" "TARGET-OS" "TCGA-BRCA" "TCGA-COAD" [49] "TCGA-CESC" "TCGA-LUSC" "TCGA-STAD" "TCGA-SKCM" [53] "TCGA-LUAD" "TARGET-WT" "TCGA-ACC" "BEATAML1.0-CRENOLANIB" [57] "BEATAML1.0-COHORT" "...
截止2019.10.17,TCGA数据库中,最新的癌种中文与英文对照表如下: 最新官方地址:https://gdc.cancer.gov/resources-tcga-users/tcga-code-tables/tcga-study-abbreviations 所有的PROJECT |id |name |:---|:--- |CPTAC-3 |CPTAC-Brain, Head and Neck, Kidney, Lung, Pancreas, Uterus |GENIE-GRCC |AACR Pr...
TCGA(The Cancer Genome Atlas, 癌症基因组图谱,https://portal.gdc.cancer.gov/)是美国国家癌症研究所(National Cancer Institute)和美国人类基因组研究所(National Human Genome Research Institute)共同监督的一个项目,旨在应用高通量的基因组分析技术,以帮助人们对癌症有个更好的认知,从而提高对于癌症的预防、诊断和...
TCGA(The Cancer Genome Atlas,癌症基因组图谱,https://portal.gdc.cancer.gov/)是美国国家癌症研究所(National Cancer Institute)和美国人类基因组研究所(National Human Genome Research Institute)共同监督的一个项目,旨在应用高通量的基因组分析技术,以帮助人们对癌症有个更好的认知,从而提高对于癌症的预防、诊断和...
Supporting reads for the detected IGHV-IGHJ recombinations in six DLBCL Samples from TCGA.Giulia, PacielloAndrea, AcquavivaChiara, PighiAlberto, FerrariniEnrico, MaciiAlberto, Zamo’Elisa, Ficarra
[37]"TCGA-BRCA""TCGA-OV""TCGA-PCPG""CTSP-DLBCL1" [41]"TCGA-UCS""CPTAC-3""TCGA-KIRP""TARGET-RT" [45]"TARGET-ALL-P3" 2.data.category 可以使用TCGAbiolinks:::getProjectSummary(project)查看project中有哪些数据类型,如查询"TCGA-LIHC",有7种数据类型(就是前面群主视频多次提到的数据类型),case...
>getGDCprojects()$project_id[1]"EXCEPTIONAL_RESPONDERS-ER""GENIE-GRCC"[3]"GENIE-DFCI""GENIE-NKI"[5]"GENIE-VICC""GENIE-UHN"[7]"GENIE-MDA""GENIE-MSK"[9]"GENIE-JHU""FM-AD"[11]"OHSU-CNL""MMRF-COMMPASS"[13]"ORGANOID-PANCREATIC""NCICCR-DLBCL"[15]"VAREPOP-APOLLO""CGCI-BLGSP"[17]...