项目实战代码:TCGA 20 条肿瘤信号通路整理 有人不喜欢空谈理论,喜欢 show me the code,好吧,今天就分享肿瘤项目实战中用到的两个脚本,完全免费。 背景知识 本文以分享代码为主,不过多涉及背景方面的知识,不太清楚的朋友可以自行查阅相关资料了解。这里只简单说下,TCGA 的 20 条肿瘤信号通路,分为两类: 一类是...
Site of resection or biopsyThe topography code which describes the anatomical site of origin of the neoplasm according to the third edition of the International Classification of Diseases for Oncology (ICD-O). See NCI Thesaurus Code: C37978. See CDE (Common Data Element) Public ID: 3226281. ...
Code Folders and files Name Last commit message Last commit date Latest commit ekopylova accession for genomes Feb 24, 2024 fade0b0·Feb 24, 2024 History 118 Commits cgc rm pycache Mar 2, 2018 docker code updates Mar 2, 2018 jupyter_notebooks ...
('ACCESSION','NAME','VERSION')) rt <- cbind(iterms[,1:2], rt[,2:ncol(rt)]) rt=as.matrix(rt) #将dataframe转化为matrix rownames(rt) = rt[,2] #获取基因名称 exp = rt[,4:ncol(rt)] #组成新的表达矩阵 barcode=colnames(exp) #获取所有样本的barcode dataSmTP <- TCGAquery_Sample...
The data underlying this article are available in GEO Database at https://www.ncbi.nlm.nih.gov/geo/, and can be accessed with accession number: GSE68465, GSE37745, GSE50081, and Xena, at https://xenabrowser.net/datapages/?cohort = TCGA%20Pan-Cancer%20(PANCAN). Funding This work was...