genome_prokka.fasta.2.7.7.80.10.50.500.1.html genome_prokka.fasta.2.7.7.80.10.50.500.1.txt.html Foundat i:42183original size:10final size:10[Alignmentexplanation](http://tandem.bu.edu/trf/trf.definitions.html#alignment)Indices:42170--42195Score:52Periodsize:10Copynumber:2.6Consensussize:1042160TATA...
3. 软件运行 命令格式:trf File Match Mismatch Delta PM PI Minscore MaxPeriod [options] (注:以上所有数字参数都为正数) File: 输入文件,fasta格式 Match:匹配权重 Mismatch:错配惩罚分值 Delta:插入缺失惩罚分值 PM:匹配概率 PI:插入的概率 Minscore:报告中比对的分值最小值,相当于筛选阈值 MaxPeriod:重复片...
A tandem repeat in DNA is two or more adjacent, approximate copies of a pattern of nucleotides. Tandem Repeats Finder is a program to locate and display tandem repeats in DNA sequences. In order to use the program, the user submits a sequence in FASTA format. There is no need to specif...
We compared the effectiveness of the RPWM method with Mreps, T-reks, Tandem Repeat Finder and ATR Hunter. About 70% of the tandem repeats found could not be found by other algorithms. The correlation of dispersed repeats and transposons with tandem repeats was studied in this work. We ...
Code Issues Pull requests RPTRF: A Rapid Perfect Tandem Repeat Finder Tool for DNA Sequences bioinformatics algorithms computational-biology tandem-repeats ngs-analysis Updated Sep 7, 2023 C++ dancooke / tandem Star 4 Code Issues Pull requests A C++ tandem repeat finding library ...
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E-TRA has several advanced repeat search parameters/options compared to other repeat finder programs as it not only accepts GenBank , FASTA and expressed sequence tags (EST) sequence files, but also does analysis of multiple files with multiple sequences. The minimum and maximum tandem repeat ...
tandem repeat (redirected fromTandem repeat sequences) [rĕ-pēt´] something done or occurring more than once, particularly over and over. long terminal r'sidenticalnucleotidesequences occurring at each end of a proviralgenomeor atransposonand believed to be essential for integration of the mo...
Tandem Repeat Database Tandem repeat sequence Tandem Repeat Sequence A Tandem repeat sequences Tandem repeats Tandem Repeats Finder Tandem Repeats over the Edit Distance tandem roller tandem roller tandem Romberg tandem Romberg tandem Romberg tandem Romberg ▼ Complete English Grammar Rules is now availabl...
We found extensive polymorphism in the size and sequence of motifs. Many of the tandem repeat loci that we detected correlated with cytogenetic fragile sites. At 2,588 loci, gene-associated expansions of tandem repeats that were rare among population control individuals were significantly more ...