1.5.4Databases for structural classification of proteins Murzin et al. (1995)constructed theSCOPdatabase, which provides a detailed and comprehensive description of the structural and evolutionary relationships of the proteins of known structures. For each protein, the classification ha...
Our study shows that proteins can be accurately classified into two main classes all alpha proteins and all beta proteins merely based on the amideI band maximum position of their FTIR spectra. ANFIS is employed to perform the classification task to demonstrate the potential of this architecture ...
(1995) SCOP: A structural classification of proteins database for the investigation of sequences and structures../. Mol. Biol.. 247, 536-540.Murzin AG, Brenner SE, Hubbard T, Chothia C: SCOP: a structural classification of proteins database for the investigation of sequences and structures....
About this entry Cite this entry (2008). Structural Classification of Proteins. In: Encyclopedia of Genetics, Genomics, Proteomics and Informatics. Springer, Dordrecht. https://doi.org/10.1007/978-1-4020-6754-9_16266 Download citation DOIhttps://doi.org/10.1007/978-1-4020-6754-9_16266 Publishe...
SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol. 247, 536–540 (1995). Article CAS PubMed Google Scholar Orengo, C. A. et al. CATH–a hierarchic classification of protein domain structures. Structure 5, 1093–1109 (...
structural classification of proteins PDB: protein data bank RMSD: root mean square deviation Rvs: ratio of volume over area.References Kendrew JC, Dickerson RE, Strandberg BE, Hart RG, Davies DR, Phillips DC, Shore VC: Structure of myoglobin: A three-dimensional Fourier synthesis at 2 A...
In a second test, we quantify the ability of the significance score of the alignments to recognize structural and evolutionary relationships. As a benchmark we use a representative set of the SCOP (structural classification of proteins) database, with similarities ranging from closely related ...
Correct functional and evolutionary classification of a new structure is difficult for distantly related proteins and error-prone using simple statistical scores based on sequence or structure similarity. The objective of this study is to classifying the protein structural classes using key amino acid ...
Finally, we look at the functional properties of proteins and check whether the post-cleavage mass distribution analysis can contribute to the classification of proteins as belonging to a certain functional group. Among non-membrane proteins obtained from the UniProt/Swissprot database41, we first foc...
Murzin AG, Brenner SE, Hubbard T, Chothia C: SCOP: a structural classification of proteins database for the investigation of sequences and structures. J Mol Biol. 1995, 247 (4): 536-540. CAS PubMed Google Scholar Orengo CA, Michie AD, Jones S, Jones DT, Swindells MB, Thornton JM:...