Chothia, "SCOP: A structural classification of proteins database for the investigation of sequences and structures," J. Mol. Biol., vol. 247, pp. 536-540, 1995.A.G. Murzin, S.E. Brenner, T. Hubbard, and C. Chot
1.5.4Databases for structural classification of proteins Murzin et al. (1995)constructed theSCOPdatabase, which provides a detailed and comprehensive description of the structural and evolutionary relationships of the proteins of known structures. For each protein, the classification has...
This superfamily is denoted as the Bet v 1-like clan in the Pfam protein family database [PfamC:CL0209] and the Bet v 1-like superfamily in the Structural Classification of Proteins (SCOP) database [SCOP:d.129.3]. In opium poppy, the purported ability of Bet v 1 proteins to bind ...
SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol. 247, 536–540 (1995). Article CAS PubMed Google Scholar Orengo, C. A. et al. CATH–a hierarchic classification of protein domain structures. Structure 5, 1093–1109 (...
Several BTB structures have been determined by X-ray crystallography, establishing the structural similarity between different examples of the fold. We use the Structural Classification of Proteins (SCOP) database terminology of 'fold' to describe the set of BTB sequences that are known or predicted...
Two databases which classify protein structures include SCOP (StructuralClassificationofProteins) [20,21] and CATH (Class,Architecture,Topology andHomologous superfamily) [38,39]. The former database relies on a manual process to classify the structures while the latter applies a combination of automat...
SCOP Cite this entry (2008). Structural Classification of Proteins. In: Encyclopedia of Genetics, Genomics, Proteomics and Informatics. Springer, Dordrecht. https://doi.org/10.1007/978-1-4020-6754-9_16266 Download citation .RIS .ENW .BIB ...
SCOP: a structural classification of proteins database for the investigation of sequences and structures. J Mol Biol. 1995;247:536–40. CAS PubMed Google Scholar Bakan A, Meireles LM, Bahar I. ProDy: protein dynamics inferred from theory and experiments. Bioinformatics. 2011;27:1575–7. ...
structural classification of proteins PDB: protein data bank RMSD: root mean square deviation Rvs: ratio of volume over area.References Kendrew JC, Dickerson RE, Strandberg BE, Hart RG, Davies DR, Phillips DC, Shore VC: Structure of myoglobin: A three-dimensional Fourier synthesis at 2 A...
Structural Classification of Proteins (SCOP) [4] is a manually annotated database and has been regarded as the most accurate classification of protein structural class. The current version of the SCOP database includes eleven structural classes, and approximately 90% of the protein domains belong ...