Proteins: ChemistryThe Structural Classification of Proteins (SCOP) database provides a detailed and comprehensive description of the relationships of all known proteins structures. The classification is on hierarchical levels: the first two levels, family and superfamily, describe near and far ...
1.5.4Databases for structural classification of proteins Murzin et al. (1995)constructed theSCOPdatabase, which provides a detailed and comprehensive description of the structural and evolutionary relationships of the proteins of known structures. For each protein, the classification ha...
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The database SCOP (Structural Classification Of Proteins) has become a major resource in bioinformatics and protein science. A particular strength of SCOP is the flexibility of its rules enabling the preservation of the many details spotted by experts in the classification process. Here we endow cla...
SCOPe (Structural Classification of Proteins – extended, http://scop.berkeley.edu ) is a database of relationships between protein structures that extends the Structural Classification of Proteins (SCOP) database. SCOP is an expert-curated ordering of domains from the majority of proteins of known...
This superfamily is denoted as the Bet v 1-like clan in the Pfam protein family database [PfamC:CL0209] and the Bet v 1-like superfamily in the Structural Classification of Proteins (SCOP) database [SCOP:d.129.3]. In opium poppy, the purported ability of Bet v 1 proteins to bind ...
Several BTB structures have been determined by X-ray crystallography, establishing the structural similarity between different examples of the fold. We use the Structural Classification of Proteins (SCOP) database terminology of 'fold' to describe the set of BTB sequences that are known or predicted...
In a second test, we quantify the ability of the significance score of the alignments to recognize structural and evolutionary relationships. As a benchmark we use a representative set of the SCOP (structural classification of proteins) database, with similarities ranging from closely related ...