Running STAR-SEQR with only star alignment outputs #29 openedAug 24, 2021byGACGAMA nested renamer is not supported #28 openedJun 22, 2021byAjeet1699 2 ERROR - b'\nBAMoutput.cpp:27:BAMoutput: exiting because of *OUTPUT FILE* error: could not create output file ...
STAR-SEQR can perform alignment or utilize existing outputs from STAR. Note- STAR-SEQR alignment parameters have been tuned for fusion calling. Python on OS starseqr.py -1 RNA_1.fastq.gz -2 RNA_2.fastq.gz -m 1 -p RNA_test -t 12 -i path/STAR_INDEX -g gencode.gtf -r hg19.fa ...